View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15009_low_9 (Length: 270)

Name: NF15009_low_9
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15009_low_9
NF15009_low_9
[»] chr3 (2 HSPs)
chr3 (13-250)||(7903375-7903606)
chr3 (153-234)||(35740232-35740312)
[»] chr7 (5 HSPs)
chr7 (95-240)||(16994393-16994537)
chr7 (14-64)||(10623444-10623494)
chr7 (13-53)||(16994588-16994628)
chr7 (107-222)||(28002574-28002688)
chr7 (16-64)||(24957660-24957708)
[»] chr1 (3 HSPs)
chr1 (152-234)||(52148737-52148819)
chr1 (135-234)||(48563175-48563273)
chr1 (13-51)||(48563366-48563404)
[»] chr4 (3 HSPs)
chr4 (109-234)||(35260242-35260366)
chr4 (16-64)||(18402790-18402838)
chr4 (106-209)||(38011662-38011765)
[»] chr8 (1 HSPs)
chr8 (107-234)||(41566102-41566228)
[»] chr6 (1 HSPs)
chr6 (14-64)||(3008748-3008798)
[»] chr2 (3 HSPs)
chr2 (82-159)||(12419515-12419592)
chr2 (82-159)||(12431575-12431652)
chr2 (107-195)||(39228857-39228945)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 7903606 - 7903375
Alignment:
Q  13 taggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacatgtacaccagtgagtcggaaacgcaataggtttcaaatatatacgtaag 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||| |||||||||||||| |||| ||||||    
T  7903606 taggcagacaagacgacttgaaacttgcagatctcaacagatcgggaaaca------ccagtgagtcggaaacacaataggtttcaaacatatgcgtaag 7903513  T
Q  113 aactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataa 212  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  7903512 aactcaaatcgaggaatgaccccaatacgttagtaatcaaaccctttcgggttaacagaaccatatcttttcaagtttttgaaaccaaaccacatcataa 7903413  T
Q  213 agaggccaaaagtcttcaaccatccaatgttatatcac 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7903412 agaggccaaaagtcttcaaccatccaatgttatatcac 7903375  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 35740232 - 35740312
Alignment:
Q  153 acccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca 234  Q
    ||||||| ||| |||||||||||| |  ||||  ||||||||||||||| ||||||| ||  ||||| ||||||||||||||    
T  35740232 accctttcgggctaacagaaccattccctttcgggtttttgaaaccaaatcacatcaaaacaaggcc-aaagtcttcaacca 35740312  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 16994537 - 16994393
Alignment:
Q  95 ttcaaatatatacgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttga 194  Q
    |||||| ||| ||||||||||||| ||| ||| | ||   ||||||  ||||||||| ||||||| ||||||||| || |||||  ||||||||||| ||    
T  16994537 ttcaaacatacacgtaagaactcagatcaagggacgagtccaataaactagtaatcagaccctttcgggttaacaaaatcataccctttcaagttttaga 16994438  T
Q  195 aaccaaaccacatcataaagaggccaaaagtcttcaaccatccaat 240  Q
    |||| | |||||||| |||||||||||||||||||||||| |||||    
T  16994437 aaccta-ccacatcaaaaagaggccaaaagtcttcaaccacccaat 16994393  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 10623494 - 10623444
Alignment:
Q  14 aggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat 64  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  10623494 aggcagacaagacaacttgaaacctgcagatctcaacaaatctggaaacat 10623444  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 16994628 - 16994588
Alignment:
Q  13 taggcagacaagacgacttgaaacttgcagatctcaacaaa 53  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  16994628 taggcagacaagacgacttgaaatctgcagatctcaacaaa 16994588  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 28002688 - 28002574
Alignment:
Q  107 cgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccaca 206  Q
    |||||||||||| ||||||| ||||   ||||| |||| ||| || |||||||  | ||| ||||  |||||  ||||| |||||||||||||| |||||    
T  28002688 cgtaagaactcagatcgagggatgagttcaatacgttaataaccagaccctttcagattagcagagtcataccctttcaggtttttgaaaccaatccaca 28002589  T
Q  207 tcataaagaggccaaa 222  Q
    ||| ||||||||||||    
T  28002588 tca-aaagaggccaaa 28002574  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24957660 - 24957708
Alignment:
Q  16 gcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat 64  Q
    ||||||||||| |||||||||||||| ||||||||| ||  ||||||||    
T  24957660 gcagacaagactacttgaaacttgcaaatctcaacagatttggaaacat 24957708  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 52148819 - 52148737
Alignment:
Q  152 aacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca 234  Q
    |||||||| ||||||||| ||||||||  ||| | |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  52148819 aaccctttcgggttaacataaccatacccttttaggtttttgaaatcaaaccacatcaaaaagaggccaaaagtcttcaacca 52148737  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 48563273 - 48563175
Alignment:
Q  135 caataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca 234  Q
    ||||| |||||||| || |||||||  |||||| ||||||||||  ||||| |||| | |||||||||||||||| ||  ||||||||||||||| ||||    
T  48563273 caatatgttagtaaccagaccctttcaggttaatagaaccataccctttcaggtttataaaaccaaaccacatca-aactaggccaaaagtcttcgacca 48563175  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 48563404 - 48563366
Alignment:
Q  13 taggcagacaagacgacttgaaacttgcagatctcaaca 51  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  48563404 taggcatacaagacgacttgaaacctgcagatctcaaca 48563366  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 35260242 - 35260366
Alignment:
Q  109 taagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatc 208  Q
    |||||||||||||||| | ||||   ||||| ||||||| |||||||||||  |||||||||||||||||   ||| || ||| ||||||||||||||||    
T  35260242 taagaactcaaatcgatggatgaatccaatatgttagtattcaaaccctttcaggttaacagaaccataccccttc-aggtttagaaaccaaaccacatc 35260340  T
Q  209 ataaagaggccaaaagtcttcaacca 234  Q
    | || |||||||||| ||||||||||    
T  35260341 aaaacgaggccaaaattcttcaacca 35260366  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 18402790 - 18402838
Alignment:
Q  16 gcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat 64  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  18402790 gcagacaagacgacttgaaatctgcagatctcaacaaatctggaaacat 18402838  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 38011662 - 38011765
Alignment:
Q  106 acgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccac 205  Q
    ||||||||| ||| ||||||| ||||   ||||| |||||||| || ||||||  |||||| |||||||||||  || | |||||| |||||||||||||    
T  38011662 acgtaagaattcagatcgagggatgagtccaatacgttagtaaccagacccttgcgggttatcagaaccatacccttacgagttttagaaaccaaaccac 38011761  T
Q  206 atca 209  Q
    ||||    
T  38011762 atca 38011765  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 41566228 - 41566102
Alignment:
Q  107 cgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccaca 206  Q
    |||||||||||| |||| || ||||    |||| |||||||| || |||||| |||||||||||||||||||  ||||  |||| | ||| |||||||||    
T  41566228 cgtaagaactcagatcgtgggatgagtctaatacgttagtaaccagacccttatgggttaacagaaccataccctttcgggtttataaaagcaaaccaca 41566129  T
Q  207 tcataaagaggccaaaagtcttcaacca 234  Q
    ||| ||| ||||||||||||||| ||||    
T  41566128 tca-aaataggccaaaagtcttcgacca 41566102  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 3008748 - 3008798
Alignment:
Q  14 aggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat 64  Q
    |||||||||| |||||||||||| | |||||||||||||||| ||||||||    
T  3008748 aggcagacaatacgacttgaaacctacagatctcaacaaatctggaaacat 3008798  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 12419515 - 12419592
Alignment:
Q  82 aaacgcaataggtttcaaatatatacgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttt 159  Q
    |||| |||||||||||||| |||  |||||||||||| ||| ||| ||||   ||||| |||||||| ||||||||||    
T  12419515 aaacacaataggtttcaaacatacgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaacccttt 12419592  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 12431575 - 12431652
Alignment:
Q  82 aaacgcaataggtttcaaatatatacgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttt 159  Q
    |||| |||||||||||||| |||  |||||||||||| ||| ||| ||||   ||||| |||||||| ||||||||||    
T  12431575 aaacacaataggtttcaaacatacgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaacccttt 12431652  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 39228945 - 39228857
Alignment:
Q  107 cgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaa 195  Q
    |||||||||||| ||||||| ||||    |||| |||||||| || | ||||| |||||||||||||||||   ||||| |||||||||    
T  39228945 cgtaagaactcagatcgagggatgagtcgaatacgttagtaaccagaacctttcgggttaacagaaccatagcctttcaggtttttgaa 39228857  T

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