View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_10 (Length: 470)
Name: NF1500_high_10
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 5318719 - 5319166
Alignment:
| Q |
17 |
actttgtcattgtcaatacctctaaacttaagaagactaaagaaatcactccacatttcagcatttttgttctcataaacaccagatcctgaagaaacaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318719 |
actttgtcattgtcaatacctctaaacttaagaagactaaagaaatcactccacatttcagcatttttgttctcataaacaccagatcctgaagaaacaa |
5318818 |
T |
|
| Q |
117 |
gtaacttaacccaccctatatcgtttgagtcgatatctttgtatggaaaagggatatgtgtgcattgtagtacaatagcaacaccttctggctctatccc |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318819 |
gtaacttaacccaccctatatcgtttgattcgatatctttgtatggaaaagggatatgtgtgcattgtagtacaatagcaacaccttctggctctatccc |
5318918 |
T |
|
| Q |
217 |
ttgatgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctaca |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318919 |
ttgatgcaaagcagaacatatctcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctaca |
5319018 |
T |
|
| Q |
317 |
actctttggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5319019 |
actctttggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatca |
5319118 |
T |
|
| Q |
417 |
caagtccacctactccacctccatgaccaattttattagtattatcta |
464 |
Q |
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| T |
5319119 |
caagtccacctactccacctccatgaccaattttattattattatcta |
5319166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 454
Target Start/End: Original strand, 3637476 - 3637706
Alignment:
| Q |
224 |
aaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactcttt |
323 |
Q |
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||||| ||||| | ||| ||||| | ||| |||||||||||||||||||| |||||| ||||||| || | || ||||||||||| || |||||||||| |
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| T |
3637476 |
aaagctgaacacacttcgtctgccagacgctgaggctcttgaagtcgtttagcaaatacttcggcgacacgagagagcttgcttaatccaacaactcttt |
3637575 |
T |
|
| Q |
324 |
ggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtcc |
423 |
Q |
| |
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| T |
3637576 |
ggccagaagggacgtaaccgacatgacatttgacttggaaaggtagcaaacaagattcacagtaggaatagaggtcaatgtctcggacaatcacaagtcc |
3637675 |
T |
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| Q |
424 |
acctactccacctccatgaccaattttatta |
454 |
Q |
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| T |
3637676 |
gcctgcaccaccagcatgaccgattttatta |
3637706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 435
Target Start/End: Complemental strand, 19100822 - 19100555
Alignment:
| Q |
168 |
ggatatgtgtgcattgtagtacaatagcaacaccttctggctctatcccttgatgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaag |
267 |
Q |
| |
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|||| ||||| ||||| |||| || |||||||| ||||||| ||| || ||||||| ||||||||| | ||||| ||| | ||| |||||||||||||| |
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| T |
19100822 |
ggatgtgtgtacattgaagtatgatggcaacaccatctggctttattccatgatgcagagcagaacaaacttcatttgcaagacgctgaggctcttgaag |
19100723 |
T |
|
| Q |
268 |
tcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttgaaatggt |
367 |
Q |
| |
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|| ||||||||| | || ||||| | | || |||||||| || |||||||||| | || || | ||||| |||||||||||||| || ||||| |
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| T |
19100722 |
ccgctttgcaaatacatcagcaacacgggagagtttgcttaaaccaacaactctttcactggagggaacgtaaccgacatgacacttgacctggaatgga |
19100623 |
T |
|
| Q |
368 |
aacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacc |
435 |
Q |
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| T |
19100622 |
agcatgcatgactcgcaataggaaaacaagtcaatatctctaacaatcacaagtccacctgctccacc |
19100555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 446
Target Start/End: Complemental strand, 21961312 - 21961060
Alignment:
| Q |
194 |
gcaacaccttctggctctatcccttgatgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccc |
293 |
Q |
| |
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|||||| || |||||| ||| || |||||| ||||| |||| | ||||| ||| | ||| |||||||||||||||| ||||||| || || |||| | |
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| T |
21961312 |
gcaacatctgctggctttattccgtgatgcgaagcataacaaacttcatttgcgagacgctgaggctcttgaagtcattttgcagatatatccacaacac |
21961213 |
T |
|
| Q |
294 |
taggaagcttgcttaagcctacaactctttggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagta |
393 |
Q |
| |
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| || |||||||| || | |||||||| ||||| || | ||||| |||||||||||||| |||||||| | || |||||||| ||||| || | |
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| T |
21961212 |
gggagagtttgcttaaaccgataactctttcaccagagggaacgtaaccaacatgacacttgacctgaaatgggagcacgcaagacttgcaataggaaaa |
21961113 |
T |
|
| Q |
394 |
gaggtcaatatctctcacaatcacaagtccacctactccacctccatgaccaa |
446 |
Q |
| |
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| ||||| |||||| |||| |||||||||||| ||||||| ||||||||| |
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| T |
21961112 |
caagtcaagatctctggcaataacaagtccacctgctccaccagcatgaccaa |
21961060 |
T |
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