View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_13 (Length: 436)
Name: NF1500_high_13
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 31543999 - 31543580
Alignment:
| Q |
1 |
taatcaagttgtcactgccatcaagcttccatcaagttcactcacagggacaatccctcagaatttcaactcactcaataatctcaccgacatcgatctt |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||| |
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| T |
31543999 |
taatcaagttgtcaccgccatcaagcttccatcaagttctctcacagggataatccctgagaatttcaactctctcaataatctcacggacatcgatctt |
31543900 |
T |
|
| Q |
101 |
cataacaactcactgaacggtccttcgcctgatttggctttcctaaacatgctccaaaccgtgaacctttgttacaataacttcacttcaatcccagact |
200 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| | |
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| T |
31543899 |
cataacaactcactcaacggtcctttgcctgatttggctttcctaaacgtgctccaaaccgtgaaccttggttacaataactttacttcaatcccagatt |
31543800 |
T |
|
| Q |
201 |
tttgctttggaaccctactagatctaacaaccctcaaccttagcaataacttgaatctcaagccatggttatttcctgaagaattatccgtgtcctcgtt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31543799 |
tttgctttggaaccctactagatctaacaaccctcaaccttagcaataacttgaatctcaagccatggttatttcctgaagaattatccgtgtcctcgtt |
31543700 |
T |
|
| Q |
301 |
gatacataccctcgatctcgaagcaacaaatctcatagcttcattaccatcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcac |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31543699 |
gatacataccctcgatctcgaagcaacaaatctcatagcttcattaccatcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcac |
31543600 |
T |
|
| Q |
401 |
aacaacttaagtggaactct |
420 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
31543599 |
aacaacttaagtggaactct |
31543580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 31550873 - 31550919
Alignment:
| Q |
233 |
ctcaaccttagcaataacttgaatctcaagccatggttatttcctga |
279 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31550873 |
ctcaaccttagtaataacttgaatctcaagccatggttatttcctga |
31550919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 406
Target Start/End: Original strand, 31550944 - 31551052
Alignment:
| Q |
298 |
gttgatacataccctcgatctcgaagcaacaaatctcatagcttcattaccatcagatatgttcaaatggtttccgcgtttgcatactgtttttctttct |
397 |
Q |
| |
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|||||| || ||||| ||||| ||||| |||||| || ||| | |||| |||||||| ||||| | |||||||| | ||||||||||||| ||| ||| |
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| T |
31550944 |
gttgatgcacacccttgatcttgaagctacaaatatcttaggtccattgccatcagacgtgttcgattggtttccaagattgcatactgtttctctctct |
31551043 |
T |
|
| Q |
398 |
cacaacaac |
406 |
Q |
| |
|
||||||||| |
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|
| T |
31551044 |
cacaacaac |
31551052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 31535334 - 31535217
Alignment:
| Q |
19 |
catcaagcttccatcaagttcactcacagggacaatccctcagaatttcaactcactcaataatctcaccgacatcgatcttcataacaactcactgaac |
118 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||| ||||| || ||||||| ||| | |||| ||| ||||||| || || ||||||||||| | | |
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|
| T |
31535334 |
catcacgcttccatcaagttcactcactggtacactcccttccaacctcaactctctctcttatctaacccacatcgacctccacaacaactcactcacc |
31535235 |
T |
|
| Q |
119 |
ggtccttcgcctgatttg |
136 |
Q |
| |
|
||| ||| |||||||||| |
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|
| T |
31535234 |
ggtactttgcctgatttg |
31535217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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