View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_15 (Length: 428)
Name: NF1500_high_15
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 102 - 411
Target Start/End: Original strand, 31166147 - 31166456
Alignment:
| Q |
102 |
ttgacaatttctcttcttatcttcaaacatataactctctccaaccttctcatatctttatagaatccaaattccaatttcaaaccattcacttgtcaca |
201 |
Q |
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| T |
31166147 |
ttgacaatttctcttcttatcttcaaacatataactctctccaaccttctcatatctttatagaatccaaattccaatttcaaaccattcactcgtcaca |
31166246 |
T |
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| Q |
202 |
cacaacaaagtaatgtctgcagaacaaattctaacgttgttagattccttttggtttgaaacaacaattctaaccaacaaaaatccttcaaaagttgaag |
301 |
Q |
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| T |
31166247 |
cacaacaaagtaatgtctgcagaacaaattctaacgttgttagattccttttggtttgaaacaacaattctaaccaacaaaaatccttcaaaagttgaag |
31166346 |
T |
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| Q |
302 |
aaattcttcctcaagacacaaatctcttacttgttccaactccaaaccttgatgttaggttctatagtgaacaaaacttgagcatcataggatctgtttt |
401 |
Q |
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| T |
31166347 |
aaattcttcctcaagacacaaatctcttacttgttccaactccaaaccttgatgttaggttctatagtgagcaaaacttgagcatcataggatctgtttt |
31166446 |
T |
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| Q |
402 |
ctctgattct |
411 |
Q |
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| T |
31166447 |
ctctgattct |
31166456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 31166051 - 31166119
Alignment:
| Q |
7 |
tcgaagaatatgggataagccaaaaacagaaaatcataggc--aattaagaaagaaatgtcactctccg |
73 |
Q |
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| T |
31166051 |
tcgaataaaatgggataagccaaaaacagaaaaacagaggcaaaattaagaaagaaatgtcactctccg |
31166119 |
T |
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