View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_18 (Length: 399)
Name: NF1500_high_18
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 885896 - 885517
Alignment:
| Q |
18 |
ccaaggatgataagcaatgtgatggggaaattatagaaataagtagcagtaggaggagtgtagctagtggaa---ttcccttcatatccatcttcacaat |
114 |
Q |
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| T |
885896 |
ccaaggatgataaggaatgtgatggggaaattatagaaataagtagcaaaaggaggagtgtagctagtggaatatttcccttcatatccatcttcacaat |
885797 |
T |
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| Q |
115 |
gtttttagaaatcaaatgaaatcgtgtaat---ggaaaacacatgaggatggcttatgcttatatagggaaattttacttaagagtaatgtatataataa |
211 |
Q |
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| T |
885796 |
gtttttagaaatcaaatgaaatcgtgtaatgtggaaaaacacatgaggatggcttatgcttatatagggaaatttaacttaagagtaatgtat---ataa |
885700 |
T |
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| Q |
212 |
tattaactataataagattaaat--nnnnnnnnntagtatttcttaattaagaacacaaaatgacaatctatttcatacaaaaatattac--nnnnnnnn |
307 |
Q |
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| T |
885699 |
tattaactataataagattaaataaataaaaaaatagtatttcttaattaagaacagaaaatgacaatctatttcatacaaaaatataactttttttttt |
885600 |
T |
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| Q |
308 |
actaatagagttaaatttaaccgaatgagtcaattatgtatgttttggttacaatttggatc-caaaaatttaaatacctatg |
389 |
Q |
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| T |
885599 |
actgatagagttaaatttaaccgaatgaatcaattatgtatgtttttgttacaatttggatcgaaaaaatttaaatacctatg |
885517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 31876538 - 31876642
Alignment:
| Q |
38 |
gatggggaaattatagaaataagtagcagtaggaggagtgtagctagtggaattccc---ttcatatcca---tcttcacaatgtttttagaaatcaaat |
131 |
Q |
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| T |
31876538 |
gatggggagattatagaaacaagtagaagaaggaggagtgtaactattggaattcccatgttgattttcatattcttcacaatgtttttaaaaatcaaat |
31876637 |
T |
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| Q |
132 |
gaaat |
136 |
Q |
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| T |
31876638 |
gaaat |
31876642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 31936520 - 31936561
Alignment:
| Q |
95 |
ttcatatccatcttcacaatgtttttagaaatcaaatgaaat |
136 |
Q |
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| T |
31936520 |
ttcatatctatcttcacaatgtttttagaaatcaaattaaat |
31936561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 31876961 - 31877003
Alignment:
| Q |
257 |
ttaagaacacaaaatgacaatctatttcatacaaaaatattac |
299 |
Q |
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| T |
31876961 |
ttaagaacacaaaatgacaatccatttaatataaaaatattac |
31877003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 31899408 - 31899335
Alignment:
| Q |
18 |
ccaaggatgataagcaatgtgatggggaaattatagaaataagtagcagtaggaggagtgtagctagtggaatt |
91 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
31899408 |
ccaaggatgataaggaatgtgatggggaaattatagaaatgagtagcagaaggaggagtgtagctagtggaatt |
31899335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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