View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_high_2 (Length: 627)

Name: NF1500_high_2
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_high_2
NF1500_high_2
[»] chr5 (3 HSPs)
chr5 (13-611)||(8758103-8758704)
chr5 (353-420)||(35732279-35732348)
chr5 (351-391)||(18345817-18345857)
[»] chr4 (2 HSPs)
chr4 (351-418)||(9521820-9521889)
chr4 (352-404)||(37951651-37951703)
[»] chr1 (3 HSPs)
chr1 (350-398)||(8296289-8296337)
chr1 (350-395)||(18280395-18280440)
chr1 (346-399)||(27829942-27829995)
[»] chr7 (6 HSPs)
chr7 (351-403)||(25583995-25584047)
chr7 (351-420)||(37757424-37757495)
chr7 (351-420)||(37763172-37763243)
chr7 (351-420)||(38603095-38603166)
chr7 (357-395)||(34383265-34383303)
chr7 (354-416)||(30969844-30969908)
[»] chr3 (1 HSPs)
chr3 (351-427)||(26868897-26868971)
[»] chr8 (2 HSPs)
chr8 (350-420)||(39421601-39421673)
chr8 (359-416)||(9824458-9824517)


Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 13 - 611
Target Start/End: Complemental strand, 8758704 - 8758103
Alignment:
Q  13 aaaatctgaggaatcattcaaagtattgtttttaggatttttctatctggtccaacgcataagagttgtagataattgtatacagcaaagtctgctacac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758704 aaaatctgaggaatcattcaaagtattgtttttaggatttttctatctggtccaacgcataagagttgtagataattgtatacagcaaagtctgctacac 8758605  T
Q  113 cttactatatactttgacgccaacactttaaagtgttctcataagataaaaa-gttaaatggtcatttttgccaagtttttagggtaagtttaaatctta 211  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  8758604 cttactatatactttgacgccaacactttacattgttctcataagataaaaaagttaaatggtcatttttgccaagtttttagggtaagtttaaatctaa 8758505  T
Q  212 acttgacatagacttatatggaacactagttgcaaagaaagggaagggttgtataaaatttaggttaagaaaacaattcactagacagttgaaaatgagt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8758504 acttgacatagacttatatggaacactagttgcaaagaaagggaagggttgtataacatttaggttaagaaaacaattcactagacagttgaaaatgagt 8758405  T
Q  312 ctgcacaactgaagaagtaaattgattgtatactgatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaacttaattaa 411  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8758404 ctgcacaactgaaaaagtaaattgattgtatactgatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaactgaattaa 8758305  T
Q  412 caaatcaaatgtgggttttacatgtacgt--tatcgaatcacgagtttgttgaaataacaacttcaaaatttctcactttacaatttactcattttggag 509  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758304 caaatcaaatgtgggttttacatgtacgttatattgaatcacgagtttgttgaaataacaacttcaaaatttctcactttacaatttactcattttggag 8758205  T
Q  510 gagccaaattgattgtatacatactcagaagaatggtggaacagataagaattatgagtggctgaaaaaccttaacatttacaatgatgatggcaatgta 609  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8758204 gagccaaattgattgtatacatactcagaagaatggtggaatagataagaattatgaatggctgaaaaaccttaacatttacaatgatgatggcaatgta 8758105  T
Q  610 ct 611  Q
    ||    
T  8758104 ct 8758103  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 35732279 - 35732348
Alignment:
Q  353 ctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaatcaaa 420  Q
    ||||| ||||||||||||||||| |||||||||||||||| || |||| ||  |||| ||||||||||||    
T  35732279 ctcctttaaagtgaacaactcactttagagtgtaaagtgactaatatcgaccgttaaataacaaatcaaa 35732348  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 18345857 - 18345817
Alignment:
Q  351 ggctcctctaaagtgaacaactcacattagagtgtaaagtg 391  Q
    |||||||||||||||| ||| |||| |||||||||||||||    
T  18345857 ggctcctctaaagtgagcaattcactttagagtgtaaagtg 18345817  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 9521820 - 9521889
Alignment:
Q  351 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaatca 418  Q
    ||||||||||||||||| || |||| ||||||||||||||||||| |||||||  |||||||||||||||    
T  9521820 ggctcctctaaagtgaataattcactttagagtgtaaagtgagtaatatcaaccattaattaacaaatca 9521889  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 37951703 - 37951651
Alignment:
Q  352 gctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaact 404  Q
    |||| |||||||||| |||||| | |||||| |||||||||||| ||||||||    
T  37951703 gctcatctaaagtgagcaactcgctttagagagtaaagtgagtaatatcaact 37951651  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 8296337 - 8296289
Alignment:
Q  350 tggctcctctaaagtgaacaactcacattagagtgtaaagtgagtatta 398  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8296337 tggctcctctaaagtgagcaactcactttagagtgtaaagtgagtatta 8296289  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 18280395 - 18280440
Alignment:
Q  350 tggctcctctaaagtgaacaactcacattagagtgtaaagtgagta 395  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  18280395 tggctcctctaaagtgagcaactcactttagagtgtaaagtgagta 18280440  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 27829942 - 27829995
Alignment:
Q  346 gatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattat 399  Q
    |||||| ||||| |||||||||||| |||| |||||| ||| ||||||||||||    
T  27829942 gatttgactcctgtaaagtgaacaattcactttagagagtatagtgagtattat 27829995  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 25583995 - 25584047
Alignment:
Q  351 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac 403  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||| |||||||    
T  25583995 ggctcttctaaagtgagcaactcactttagagtgtaaagtgagtaatatcaac 25584047  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 37757424 - 37757495
Alignment:
Q  351 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaa--cttaattaacaaatcaaa 420  Q
    |||||||||||| ||| |||||||| |||||||||||||||| || ||||||   |||||||| ||||||||    
T  37757424 ggctcctctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaa 37757495  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 37763172 - 37763243
Alignment:
Q  351 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaa--cttaattaacaaatcaaa 420  Q
    |||||||||||| ||| |||||||| |||||||||||||||| || ||||||   |||||||| ||||||||    
T  37763172 ggctcctctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaa 37763243  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 38603166 - 38603095
Alignment:
Q  351 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaatcaaa 420  Q
    ||||||| |||| ||| |||||||| |||||||||||||||| || |||||||  |||||||| ||||||||    
T  38603166 ggctcctttaaaatgagcaactcactttagagtgtaaagtgaataatatcaaccgttaattaaaaaatcaaa 38603095  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 34383265 - 34383303
Alignment:
Q  357 tctaaagtgaacaactcacattagagtgtaaagtgagta 395  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  34383265 tctaaagtgaacaactcactttagagtctaaagtgagta 34383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 30969908 - 30969844
Alignment:
Q  354 tcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaat 416  Q
    ||||||||||||| ||||| || ||||||||||||||| | | |||||||  |||||||||||||    
T  30969908 tcctctaaagtgagcaactaactttagagtgtaaagtgcgcaatatcaaccgttaattaacaaat 30969844  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 26868971 - 26868897
Alignment:
Q  351 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaacttaattaacaaatcaaatgtgggt 427  Q
    ||||||||||||| || |||||||| ||||| |||||| ||||||||||||  || ||||| |||||||| ||||||    
T  26868971 ggctcctctaaagcgagcaactcactttagaatgtaaaatgagtattatca--ttgattaagaaatcaaaggtgggt 26868897  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 420
Target Start/End: Complemental strand, 39421673 - 39421601
Alignment:
Q  350 tggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaatcaaa 420  Q
    ||||||||||||||||| |||  ||| ||| ||| ||||||||||| |||||||  || ||||||||||||||    
T  39421673 tggctcctctaaagtgagcaatccactttaaagtataaagtgagtaatatcaaccattgattaacaaatcaaa 39421601  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 9824458 - 9824517
Alignment:
Q  359 taaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaat 416  Q
    |||||| |||||||||| |||||||||||||| || | |||||||  |||||||||||||    
T  9824458 taaagtaaacaactcactttagagtgtaaagtaagcaatatcaactattaattaacaaat 9824517  T

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