View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_20 (Length: 368)
Name: NF1500_high_20
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 173 - 355
Target Start/End: Complemental strand, 30874352 - 30874170
Alignment:
| Q |
173 |
gaaaactttgagtatatggccggcatagacttgggttcagcatcacaacactttgttcatcgccttcaacgccctgacctagaagttcatgatgagagtc |
272 |
Q |
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| T |
30874352 |
gaaaactttgagtatatggccggcatagacttgggttcagcatcacaacactttgttcatcgccttcaacgtcctgacctagaagttcatgatgagagtc |
30874253 |
T |
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| Q |
273 |
aagaccaagatggaaacaacaacaataaccatgaagggcttgacctagtttcaccaaatcatggtcttggagatgtagttggt |
355 |
Q |
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| T |
30874252 |
aagaccaagatggaaacaacaacaataaccatgaagggcttgacctagtttcaccaaatcatggtcttggagatgtagttggt |
30874170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 30874506 - 30874432
Alignment:
| Q |
19 |
ggacactcctaaatctaatactttcttttctatnnnnnnntttataattcctgtttacatataatttaattgttc |
93 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30874506 |
ggacactcctaaatctaatactttcttttctataaaaaattttataattcctgtttacatataatttaattgttc |
30874432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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