View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_21 (Length: 365)
Name: NF1500_high_21
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 39756599 - 39756947
Alignment:
| Q |
1 |
aaatgctaatgtcgttaaagaaaggtattattttcttctatatactttagtagttggaaagataaattaaaaaattattgtgatcagtataacgtaatta |
100 |
Q |
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| T |
39756599 |
aaatgccaatttcgttaaagaaaggtattatttgctactatatagtttagtagttggaaagataaactaaaaaataattgtgatcagtataacctaatta |
39756698 |
T |
|
| Q |
101 |
ttttcaactatcattgcaaggatcatcaaatgggtcactcaaaaaggattggaagatgacaagggaaattcaaaaagcaccattcaacttgtcattcttg |
200 |
Q |
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| T |
39756699 |
ttttcaactttcatttcaaggatcatcaaatgggtcactcaaaaaggattggaagatgacaagggaaattcaaaaagcaccattcaacttgtcattcttg |
39756798 |
T |
|
| Q |
201 |
acacttcgagtaagatttttataatttctatacttactctttcttaaaatctcgcagttattttcttgtctgattgatcaatacatgtacgatattgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |
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| T |
39756799 |
acacttcgagtaagatttttataatttctatacttactctttcttaaaatctcgcagttattttcttgtctgattgatcaatgcatggatgatattgtta |
39756898 |
T |
|
| Q |
301 |
tagatttggtgaacattgacacctctggaattgcttctatggaggaact |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39756899 |
tagatttggtgaacattgacacctctggaattgcttctatggaggaact |
39756947 |
T |
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