View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_22 (Length: 341)
Name: NF1500_high_22
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 24337433 - 24337117
Alignment:
| Q |
12 |
tccatccaaaataaattatgatgcaattttgcaagaatgaatccaacaaaaatgcctaagattgggggtgaaggtccctcaccatgttcacacattatag |
111 |
Q |
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| T |
24337433 |
tccatccaaaataaattatgatgcaattttgcaagaatgaatccaacaaaaatgcctaagattgggggtgaaggtccctcaccatgttcacacattataa |
24337334 |
T |
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| Q |
112 |
gacactcaaatacaagtaacagcctggtcatagcttcacttgatggacaagttcaagcaagcaaacaaaacaaaaatataatataatttggaccnnnnnn |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24337333 |
gacactcaaatacaagtaacagcctggtcatagcttcacttgatggacatgttcaagcaagcaaacaaaacaaaaatataatataatttggaccaaaaaa |
24337234 |
T |
|
| Q |
212 |
ntataatttggacaactttcaatatttatatattattcaaaggaaaatattattttacagctagacaaatccaaaaactatatgatttatctcttgtaca |
311 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24337233 |
atataatttggacaactttcattatttatatattattcaaaggaaaatattattttacagctagacaaatccaaaaactatatgatttatctcttgtaca |
24337134 |
T |
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| Q |
312 |
ttttcttcattgactct |
328 |
Q |
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||||||||||||||||| |
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| T |
24337133 |
ttttcttcattgactct |
24337117 |
T |
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