View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_23 (Length: 336)
Name: NF1500_high_23
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 29857737 - 29857604
Alignment:
| Q |
25 |
aacagaattttaatatttcactgcatctggacataataatatatgttttcccacattatccacccnnnnnnnct-aattataaagttaacttattcattt |
123 |
Q |
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| T |
29857737 |
aacagaattttaatatttcactgcatcaggaaataataatctatgttttctcacattatccacccaaaaaaatttaattataaagttaatttattcattt |
29857638 |
T |
|
| Q |
124 |
tccaatatcttgtttcatgactcagtttcctatc |
157 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
29857637 |
tccaatatcttgtttcatgattcagtttcctatc |
29857604 |
T |
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