View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_26 (Length: 330)
Name: NF1500_high_26
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 990639 - 990934
Alignment:
| Q |
20 |
tggggatactctcatggtgaattttgacagctggttagatactgctgtgggtattttcaccagttccgacaaattttactgatacactacttttccacta |
119 |
Q |
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| T |
990639 |
tggggatactcccatggtgaattttgacagctagttagatactgctgtgggtattttcaccagttccgacaaattttactgacacactacttttccacta |
990738 |
T |
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| Q |
120 |
cctaatggatcttttttgtataatttatggattctctctttgatattgttcacaagaaaagttccctatttcaggttctctttataacttgcattaagtt |
219 |
Q |
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| T |
990739 |
cctaatggatcttttttgtataatttatggattctgtctttgatattgttcacaagaaaagttccctatttcaggttctctttataacttgcattaagtt |
990838 |
T |
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| Q |
220 |
actactaaactttcatccattttcatgcttggaagaaatataatatatttatgggattagagaaactccgccaaaaaatcttcacccttccttgtccttt |
319 |
Q |
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| T |
990839 |
actactaaactttcatccattctcatgcttggaaga-----aatatatttatgggattggagaaactccgccaaaaaatcttcacccttccttgtccttt |
990933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 71 - 309
Target Start/End: Original strand, 1023874 - 1024110
Alignment:
| Q |
71 |
tattttcaccagttccgacaaattttactgatacactacttttccactacctaatggatcttttttgtataatttatggattctctctttgatattgttc |
170 |
Q |
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| T |
1023874 |
tattttcaccagttccaacaaattttgctgatacactacttttccgctacctaatggatcttttccgtatactatattgattctctccttgatcttgttc |
1023973 |
T |
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| Q |
171 |
acaagaaaagttccctatttcaggttctctttataacttg--cattaagttactactaaactttcatccattttcatgcttggaagaaatataatatatt |
268 |
Q |
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| T |
1023974 |
aaaagaaaaactctctgctttaagttctcttcataacttctccatgaagttaatactaaactttcatgcattttcatgcttggaagaaatgta-----tt |
1024068 |
T |
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| Q |
269 |
tatgggattagagaaactccgcc-aaaaaatcttcacccttc |
309 |
Q |
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| T |
1024069 |
tgtgggattagaggaactctgccaaaaaaatcttcactcttc |
1024110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 1008569 - 1008667
Alignment:
| Q |
215 |
aagttactactaaactttcatccattttcatgcttggaagaaatataatatatttatgggattagagaaactccgccaaaa-aatcttcacccttccttg |
313 |
Q |
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| T |
1008569 |
aagttaatactaaactttcatgcattttcatgcttggaagaaatata-----tttgttggattagaggaactctgccaaaaaaatcttcactcttcctcg |
1008663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 957592 - 957640
Alignment:
| Q |
150 |
attctctctttgatattgttcacaagaaaagttccctatttcaggttct |
198 |
Q |
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| T |
957592 |
attctctccttgatcttgttcagaagaaaagttccctattgcaggttct |
957640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 22671121 - 22670825
Alignment:
| Q |
20 |
tggggatactctcatggtgaattttgacagctggttag--atactgctgtgggtattttcaccagttccgacaaattttactgatacactacttttccac |
117 |
Q |
| |
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|||||||| |||||||||||| |||||||||| || || | | ||||| ||| ||||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
22671121 |
tggggatattctcatggtgaaatttgacagctagtaagtaagattgctgagggcattttcaccagttccaacaaattttgctgatacaacacttttccta |
22671022 |
T |
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| Q |
118 |
tacctaatggatcttttttgtataatttatggattctctctttgatattgttcacaagaaaagttccctatttcaggttctctttataacttg--catta |
215 |
Q |
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| T |
22671021 |
tacctaatggatctttttcgtataatatattgattctcttcttgatcatgttcaaatgaaaagttccttgcttcaggttctcttcataacttctccgtga |
22670922 |
T |
|
| Q |
216 |
agttactactaaactttcat-ccattttcatgcttggaagaaatataatatatttatgggattagagaaactccgccaaaaaatcttcacccttccttgt |
314 |
Q |
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| T |
22670921 |
agttaatattaaactttcattccattttcatgcttggaaga-----tatatatctgtgggattagagaagctttgccaaagaatcttcactcttccttgt |
22670827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 21933416 - 21933305
Alignment:
| Q |
74 |
tttcaccagttccgacaaattttactgatacactacttttccactacctaatggatcttttttgtataatttatggattctctctttgatattgttcaca |
173 |
Q |
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|||||||| |||| ||||||||| ||||||||||||||||||| ||| | || ||||| || |||||| ||| ||||| || ||| || |||||| | |
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| T |
21933416 |
tttcaccacttccaacaaattttcctgatacactacttttccaatacttcatagatctcttccatataatatattgattcactttttcatcttgttcgaa |
21933317 |
T |
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| Q |
174 |
agaaaagttccc |
185 |
Q |
| |
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|| ||||||||| |
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| T |
21933316 |
agtaaagttccc |
21933305 |
T |
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