View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_high_33 (Length: 308)

Name: NF1500_high_33
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_high_33
NF1500_high_33
[»] chr6 (3 HSPs)
chr6 (8-290)||(11297147-11297429)
chr6 (30-202)||(24894206-24894380)
chr6 (173-234)||(13599161-13599222)
[»] chr1 (7 HSPs)
chr1 (16-265)||(5193407-5193658)
chr1 (23-262)||(43297907-43298148)
chr1 (35-289)||(50236937-50237193)
chr1 (8-214)||(31325297-31325505)
chr1 (44-262)||(1524516-1524736)
chr1 (44-118)||(1524191-1524265)
chr1 (173-290)||(23464858-23464975)
[»] chr2 (6 HSPs)
chr2 (21-262)||(572738-572981)
chr2 (8-256)||(40327730-40327980)
chr2 (17-256)||(35135573-35135814)
chr2 (213-265)||(16321992-16322044)
chr2 (8-108)||(26791023-26791123)
chr2 (177-289)||(39012049-39012161)
[»] chr7 (2 HSPs)
chr7 (23-146)||(23208229-23208352)
chr7 (173-290)||(16770476-16770593)
[»] chr3 (3 HSPs)
chr3 (30-202)||(23424107-23424281)
chr3 (8-262)||(38647527-38647783)
chr3 (177-289)||(3660131-3660243)
[»] chr5 (4 HSPs)
chr5 (127-290)||(7813345-7813510)
chr5 (173-262)||(23944564-23944653)
chr5 (13-93)||(23944735-23944815)
chr5 (8-101)||(7816844-7816937)
[»] chr4 (2 HSPs)
chr4 (8-262)||(54477753-54478009)
chr4 (13-72)||(33803716-33803775)
[»] scaffold0036 (1 HSPs)
scaffold0036 (195-253)||(75467-75525)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 11297147 - 11297429
Alignment:
Q  8 ccaagaatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttat 107  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |    
T  11297147 ccaataatattagtaagaataggtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttgcagagactgatgggtctaaaatctttgt 11297246  T
Q  108 atgtgctaggaagatcaattttttgaatgagtgcaatgattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaa 207  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |    
T  11297247 atgtactaggaggatcaatttttggaatgagtgcaatgattgtttgagatgtccggctaaaaataacctgtttgaaatgctgaatgaaccatatgaaata 11297346  T
Q  208 tatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcata 290  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||   ||||||||||||||||||    
T  11297347 tatcatcactaacaacgtgtcaatattgcttgaagaaaatgcaatgaaagccattgggtcatgaagctttctaaggtttcata 11297429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 24894206 - 24894380
Alignment:
Q  30 gtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaatttt 129  Q
    |||||||||||||||| | |||||| | |||||| ||||||||||||||| | ||||||||||||||||||| |||  | ||| | ||  | || |||||    
T  24894206 gtctgagacgatgcacaagaactttagggataatcttgtagattatgttgcatagactgatgggtctaaaatctttgaaagtggtgggggggtcgatttt 24894305  T
Q  130 ttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatg 202  Q
      |||||||||||||  || ||||||| || ||||| | ||| | |||||| |||||||||| ||| ||||||||    
T  24894306 cggaatgagtgcaatgagagtgtttgaaatctccggatcaaagtgacctgtgtggaaggctgtatggaccatatg 24894380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 13599222 - 13599161
Alignment:
Q  173 acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatatt 234  Q
    |||| ||||||||||||| || ||||||||| |||||||||| | || |||||| |||||||    
T  13599222 acctttttggaaggctgactgcaccatatgagaaatatcatccccaataatgtgccaatatt 13599161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 5193407 - 5193658
Alignment:
Q  16 attagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgcta 115  Q
    |||| |||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||| || ||| |     
T  5193407 attattaagaataggtctgagacgatgcacaagaacttttgtgataatcttgtagattatgttgcagaggctgatgggtctaaaatctttgtaagtgttg 5193506  T
Q  116 ggaagatcaattttttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcat 213  Q
     |   |||||||||| |||||||||||||  || || ||||||| ||||| | ||| | ||||||||||||||||||||  ||||| ||||||| |||||    
T  5193507 agtgaatcaatttttggaatgagtgcaatgagagtgcttgagatctccggatcaaagtgacctgtttggaaggctgaatagaccatgtgaaaaacatcat 5193606  T
Q  214 cactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcggg 265  Q
    | | ||| ||||| |||||||  || ||||| |||||||| ||| |||||||    
T  5193607 ctccaactatgtgccaatattgtttaaagaagatgcaatggaagtcatcggg 5193658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 43298148 - 43297907
Alignment:
Q  23 agaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagat 122  Q
    |||||| |||||||||  ||||| | ||||||||| ||||| || |||||||||||| ||||||||||||| ||||||| ||| || ||| | ||   ||    
T  43298148 agaataggtctgagacagtgcacaagaacttttgtaataatcttatagattatgttgcagagactgatgggcctaaaatctttgtaagtgttgggtgaat 43298049  T
Q  123 caattttttgaatgagtgcaatgattgt--ttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaac 220  Q
    |||||||  |||||||||||||||  ||  |||| || ||| | | ||||| |||| ||||||||||||| || ||||| ||||||| |||||| | |||    
T  43298048 caattttaggaatgagtgcaatgagagtgcttgaaatctccagatcaaaatgacctatttggaaggctgagtggaccatgtgaaaaacatcatctccaac 43297949  T
Q  221 aatgtgtcaatattacttgaagaaaatgcaatgaaagccatc 262  Q
     ||||| |||||||  |||||||| |||||||| ||||||||    
T  43297948 tatgtgccaatattgtttgaagaagatgcaatggaagccatc 43297907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 289
Target Start/End: Original strand, 50236937 - 50237193
Alignment:
Q  35 agacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaa 134  Q
    |||||||||||||||||||| |||||||| |||||||  |||||  | || ||||| |  ||||| | ||| || |||   || |||||||||||  |||    
T  50236937 agacgatgcaccaaaactttagtgataatcttgtagacaatgttacaaaggctgatagacctaaagtctttgtaggtggcgggcagatcaattttaggaa 50237036  T
Q  135 tgagtgcaatgattgt--ttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaata 232  Q
    |||||||||||| |||  ||||||| || || | ||||| ||||||  |||||||||| || |||| ||| ||||| ||||||| ||||||||| |||||    
T  50237037 tgagtgcaatgagtgtgtttgagatctctggatcaaaatgacctgtgaggaaggctgagtgtaccaaatgtaaaatgtcatcaccaacaatgtgccaata 50237136  T
Q  233 ttacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcat 289  Q
    ||  ||||||||||||||||| |||||||| ||||   | ||||| |||||||||||    
T  50237137 ttgtttgaagaaaatgcaatggaagccatctggtccaggtgctttgtaaggtttcat 50237193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 31325297 - 31325505
Alignment:
Q  8 ccaagaatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttat 107  Q
    |||| ||||||| | |||||| | ||||| || ||||| | ||||||||| || || ||||||||||||||  | |||||||| ||| |||||| ||| |    
T  31325297 ccaataatattattgagaataggcctgaggcggtgcacaagaacttttgtaatgatcttgtagattatgttacaaagactgataggtttaaaatctttgt 31325396  T
Q  108 atgtgctaggaagatcaattttttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaa 205  Q
    ||||| ||||   |||||||||| |||||||||||||  || | |||||||| ||||| | ||| | ||| || || || ||||| || |||||||||||    
T  31325397 atgtgttaggggaatcaatttttggaatgagtgcaataagagtttttgagatctccggatcaaagtgaccagtgtgaaaagctgagtggaccatatgaaa 31325496  T
Q  206 aatatcatc 214  Q
    |||||||||    
T  31325497 aatatcatc 31325505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 262
Target Start/End: Complemental strand, 1524736 - 1524516
Alignment:
Q  44 accaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaa 143  Q
    ||||||||||| ||||||||||| || |  |||||| | | ||||||||||||||||| ||| ||  || |||||   ||||| ||  ||||||||||||    
T  1524736 accaaaactttggtgataattttataaacaatgttgcacatactgatgggtctaaaatctttgtaaatgttaggagtgtcaatcttgggaatgagtgcaa 1524637  T
Q  144 t--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaa 241  Q
    |  || | ||||| || ||||| | ||||| |||  |||| ||||||||||| ||||  |||||||| ||||| | ||| || || || |||| ||||||    
T  1524636 tgagagtatttgaaatctccggatcaaaatgaccattttgaaaggctgaatgtaccaagtgaaaaatgtcatctccaactatatgccagtatttcttgaa 1524537  T
Q  242 gaaaatgcaatgaaagccatc 262  Q
    ||| ||||| ||||| |||||    
T  1524536 gaagatgcattgaaaaccatc 1524516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 1524265 - 1524191
Alignment:
Q  44 accaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctagga 118  Q
    ||||||||||| ||||||||||| || |  |||||| | ||||||||||||||||||| ||| || ||| |||||    
T  1524265 accaaaactttggtgataattttataaacaatgttgcacagactgatgggtctaaaatctttgtaagtgttagga 1524191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 23464975 - 23464858
Alignment:
Q  173 acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagg 272  Q
    |||||||||||| ||  |||| |||||||  ||||||||||| | |  |||||| || ||||  ||||| |||||||| || |||||||| |||| | |     
T  23464975 acctgtttggaaagccaaatgcaccatattgaaaatatcatctccagtaatgtgccagtattgtttgaaaaaaatgcattggaagccatctggtcctggt 23464876  T
Q  273 gctttctaaggtttcata 290  Q
    ||||| ||||||||||||    
T  23464875 gctttgtaaggtttcata 23464858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 572981 - 572738
Alignment:
Q  21 taagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaag 120  Q
    |||||||| |||| ||||||||||| | |||||||||||| || ||||||||  | ||| |||| |||||||||||||||| ||| || ||| | |||      
T  572981 taagaataggtctaagacgatgcacaagaacttttgtgatgatattgtagatcgtattgcagaggctgatgggtctaaaatctttgtaagtgatgggaga 572882  T
Q  121 atcaattttttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcacta 218  Q
    |||||||||| |||||||||||||  || ||| |||||| ||| | | ||||||||||||  |||| ||||| ||||||||||| || || ||||| | |    
T  572881 atcaatttttggaatgagtgcaataagagtgtatgagatctccagatcaaaataacctgtgaggaaagctgattgaaccatatggaagatgtcatctcca 572782  T
Q  219 acaatgtgtcaatattacttgaagaaaatgcaatgaaagccatc 262  Q
    || ||||| |||||||  |||||||| |||||||| ||||||||    
T  572781 actatgtgccaatattgtttgaagaagatgcaatggaagccatc 572738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 40327980 - 40327730
Alignment:
Q  8 ccaagaatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttat 107  Q
    |||| ||| ||||| |||||| | || || ||||| ||||| || ||||||||||||||||| || |||||| | || || |||||||| |||| ||| |    
T  40327980 ccaataatgttagtgagaataggccttagccgatgaaccaatacctttgtgataattttgtaaataatgttgcaaaggctaatgggtctgaaatctttgt 40327881  T
Q  108 atgtgctaggaagatcaattttttgaatgagtgcaatgat--tgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaa 205  Q
    | ||  | ||  | ||||||||| ||||||| |||||||   |||||||||| ||||| | ||| |||||  | ||| |||||| ||| ||||| |  ||    
T  40327880 aagtagtgggtggttcaatttttggaatgagcgcaatgagagtgtttgagatctccggatcaaagtaaccactatggtaggctgcatggaccattttgaa 40327781  T
Q  206 aatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaa 256  Q
    ||||||||| |  |||||||| || ||||  ||||||||||||||||||||    
T  40327780 aatatcatctccgacaatgtgccagtattgtttgaagaaaatgcaatgaaa 40327730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 35135573 - 35135814
Alignment:
Q  17 ttagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctag 116  Q
    ||||| |||||| | || || ||||| ||||| || ||||||||||||||||| || |||||| | || || |||||| | |||| ||| || ||  | |    
T  35135573 ttagtgagaataggccttagccgatgaaccaatacctttgtgataattttgtaaataatgttgcaaaggctaatgggtatgaaatctttgtaagtagtgg 35135672  T
Q  117 gaagatcaattttttgaatgagtgcaatgat--tgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatc 214  Q
    |  | ||||||||| ||||||| |||||||   |||||||||| ||||| | ||| |||||  | ||| | |||| ||| ||||| |  |||||||||||    
T  35135673 gtggttcaatttttggaatgagcgcaatgagagtgtttgagatctccggatcaaagtaaccactatggtaagctgcatggaccattttgaaaatatcatc 35135772  T
Q  215 actaacaatgtgtcaatattacttgaagaaaatgcaatgaaa 256  Q
     |  |||||||| || |||| |||||||||||||||||||||    
T  35135773 tccgacaatgtgccagtattgcttgaagaaaatgcaatgaaa 35135814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 16322044 - 16321992
Alignment:
Q  213 tcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcggg 265  Q
    |||| ||||||||| || ||||  || ||||||||||||||||||||||||||    
T  16322044 tcaccaacaatgtgccagtattgtttaaagaaaatgcaatgaaagccatcggg 16321992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 26791123 - 26791023
Alignment:
Q  8 ccaagaatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttat 107  Q
    |||| ||||||| |||| ||| ||||||| ||||| || |  ||||| ||||||||||||||||| |||||  | || || ||||||||||| | |||||    
T  26791123 ccaataatattattaaggataggtctgaggcgatggacaaggactttagtgataattttgtagatgatgttacaaaggctaatgggtctaaagtctttat 26791024  T
Q  108 a 108  Q
    |    
T  26791023 a 26791023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 289
Target Start/End: Complemental strand, 39012161 - 39012049
Alignment:
Q  177 gtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctt 276  Q
    |||||||| || || || |||||||||||||| ||||| | || |||||| ||||||| ||| || || ||||| || |||||||| ||||   ||||||    
T  39012161 gtttggaaagcagattggaccatatgaaaaatgtcatctccaataatgtgccaatattgcttaaaaaatatgcattggaagccatctggtccaggggctt 39012062  T
Q  277 tctaaggtttcat 289  Q
    | || ||||||||    
T  39012061 tgtagggtttcat 39012049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 23208229 - 23208352
Alignment:
Q  23 agaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagat 122  Q
    |||||| |||||||||||||||| | |||||| |||||||| |||||| |||||||| ||||||||||||||||||||| ||| |||||| | ||  | |    
T  23208229 agaataggtctgagacgatgcacaagaactttagtgataatcttgtaggttatgttgcagagactgatgggtctaaaatctttgtatgtggtgggggggt 23208328  T
Q  123 caattttttgaatgagtgcaatga 146  Q
    | |||||  |||||||||||||||    
T  23208329 cgattttaggaatgagtgcaatga 23208352  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 16770476 - 16770593
Alignment:
Q  173 acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagg 272  Q
    |||||||||||| || ||||| |||||||  ||||||||||| | || |||||| || ||||  ||||| |||||||| || || ||||| || | | |     
T  16770476 acctgtttggaaagccgaatgcaccatattgaaaatatcatctccaataatgtgccagtattgtttgaaaaaaatgcattggaaaccatccggacctggt 16770575  T
Q  273 gctttctaaggtttcata 290  Q
    ||||| ||||||||||||    
T  16770576 gctttgtaaggtttcata 16770593  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 23424281 - 23424107
Alignment:
Q  30 gtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaatttt 129  Q
    |||||||||||||||| | |||||| |||||||| ||||||||||||||| | ||||| ||||||||||||| ||| || ||| | ||    || |||||    
T  23424281 gtctgagacgatgcacaagaactttagtgataatcttgtagattatgttgcatagacttatgggtctaaaatctttgtaagtggtgggggtttcgatttt 23424182  T
Q  130 ttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatg 202  Q
    | |||||||||||||  || ||||||| || ||||| | ||| | ||||||||||||||||  ||| ||||||||    
T  23424181 tggaatgagtgcaatgagagtgtttgaaatctccggatcaaagttacctgtttggaaggctttatggaccatatg 23424107  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 38647527 - 38647783
Alignment:
Q  8 ccaagaatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttat 107  Q
    |||| ||||||| | |||||| |||||||||| ||||| | |||||| || ||||| ||||||||||||||| ||||||| |||||||| || | ||| |    
T  38647527 ccaataatattattgagaataggtctgagacggtgcacaagaactttagtaataatcttgtagattatgttgcagagacttatgggtctgaagtctttgt 38647626  T
Q  108 atgtgctaggaag-atcaattttttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaa 204  Q
    | ||| | ||| | |||||||||  |||||||||||||  || ||||||| || ||||| | ||||| |||||| || || |||||||| ||||||||      
T  38647627 aagtg-ttggatgaatcaattttcggaatgagtgcaataagagtgtttgaaatctccggatcaaaatgacctgtgtgaaaagctgaatggaccatatggt 38647725  T
Q  205 aaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatc 262  Q
    |||| ||||| |  || ||||| |||||||  |||||||| || ||||| || |||||    
T  38647726 aaatgtcatctccgactatgtgccaatattgtttgaagaagatacaatggaaaccatc 38647783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 3660131 - 3660243
Alignment:
Q  177 gtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctt 276  Q
    |||||||| || || || |||||||||||||| ||||| | || |||||| ||||||| ||| || || ||||| || |||||||| ||||   ||||||    
T  3660131 gtttggaaagcagattggaccatatgaaaaatgtcatctccaataatgtgccaatattgcttaaaaaatatgcattggaagccatctggtccaggggctt 3660230  T
Q  277 tctaaggtttcat 289  Q
    | || ||||||||    
T  3660231 tgtagggtttcat 3660243  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 7813510 - 7813345
Alignment:
Q  127 tttttgaatgagtgcaatgattgt--ttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatg 224  Q
    |||| |||||||||||||||  ||  ||||||| | ||| | ||||||||| |||||||||||||  || |||||||||||||||||||  | ||||||     
T  7813510 ttttggaatgagtgcaatgagagtgcttgagatcttcggatcaaaataaccagtttggaaggctgtttggaccatatgaaaaatatcattgccaacaata 7813411  T
Q  225 tgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcata 290  Q
    || || || |  |||||||| || ||||| || || || |||| | ||||||| ||||||||||||    
T  7813410 tgccagtactgtttgaagaagatacaatggaaaccgtcaggtcctggggctttgtaaggtttcata 7813345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 23944653 - 23944564
Alignment:
Q  173 acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatc 262  Q
    |||||| ||||||||||| ||||||| | | ||||||||||| | |||||||||||| |||| ||||||||| || || ||||| |||||    
T  23944653 acctgtatggaaggctgagtgaaccaaacggaaaatatcatctccaacaatgtgtcagtattgcttgaagaagatacattgaaaaccatc 23944564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 23944815 - 23944735
Alignment:
Q  13 aatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatggg 93  Q
    ||||||| |||||||| |||||||||| || ||||||||||| || || ||||||||||| || ||| | | |||||||||    
T  23944815 aatattattaagaataggtctgagacgctggaccaaaactttagtaatgattttgtagatgatattgcataaactgatggg 23944735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 7816937 - 7816844
Alignment:
Q  8 ccaagaatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaat 101  Q
    |||| ||| |||||||||||| | || || || || |||||||| || ||||| ||||||||||| || ||| ||||| |||||||||| ||||    
T  7816937 ccaataatgttagtaagaataggccttagtcggtggaccaaaaccttagtgattattttgtagataatattgcagagattgatgggtctgaaat 7816844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 54477753 - 54478009
Alignment:
Q  8 ccaagaatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttat 107  Q
    |||| ||| |||||||||||| | || || || || |||||||| |||||||||||||||||||| || ||  | || ||||||||||| || | |||||    
T  54477753 ccaataatgttagtaagaataggccttagtcggtgaaccaaaacctttgtgataattttgtagatgatattacaaaggctgatgggtctgaagtctttat 54477852  T
Q  108 atgtgctaggaagatcaattttttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaa 205  Q
    | ||  | ||  | |||||| |  |||||||||||||  || |||||||||| || || | ||| |||||  |||| || ||||  || ||||| ||| |    
T  54477853 aagtagtgggtgggtcaattataggaatgagtgcaatgagagtgtttgagatctctggatcaaagtaaccgatttgaaaagctgtgtggaccatttgata 54477952  T
Q  206 aatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatc 262  Q
     |||||||||| ||||||||| |||||||  |||||||| ||| | || ||||||||    
T  54477953 gatatcatcaccaacaatgtgccaatattgtttgaagaagatgtagtggaagccatc 54478009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 33803775 - 33803716
Alignment:
Q  13 aatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagat 72  Q
    ||||||| |||||||| |||||||||| || ||||||||||| || || |||||||||||    
T  33803775 aatattattaagaataggtctgagacgctggaccaaaactttagtaatgattttgtagat 33803716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 75525 - 75467
Alignment:
Q  195 accatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatg 253  Q
    ||||| || ||||||||||||| ||||||||| || ||||  |||||||||||||||||    
T  75525 accatttggaaaatatcatcaccaacaatgtgccagtattgtttgaagaaaatgcaatg 75467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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