View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_high_38 (Length: 271)

Name: NF1500_high_38
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_high_38
NF1500_high_38
[»] chr6 (47 HSPs)
chr6 (11-255)||(26658161-26658405)
chr6 (11-255)||(26764132-26764376)
chr6 (33-255)||(25513079-25513301)
chr6 (11-200)||(27608909-27609098)
chr6 (11-187)||(27681166-27681342)
chr6 (11-255)||(26886288-26886532)
chr6 (11-200)||(28794591-28794780)
chr6 (11-179)||(25485229-25485397)
chr6 (20-227)||(26850860-26851067)
chr6 (24-225)||(27675344-27675545)
chr6 (11-167)||(26951959-26952115)
chr6 (24-200)||(27590772-27590948)
chr6 (20-179)||(27704027-27704186)
chr6 (41-231)||(25581919-25582109)
chr6 (11-205)||(26863790-26863984)
chr6 (19-231)||(26058097-26058309)
chr6 (19-231)||(26078067-26078279)
chr6 (39-227)||(26145063-26145251)
chr6 (33-168)||(27602544-27602679)
chr6 (33-231)||(25547172-25547370)
chr6 (11-157)||(27696423-27696569)
chr6 (23-255)||(26826017-26826249)
chr6 (11-219)||(27529045-27529253)
chr6 (11-234)||(31286758-31286981)
chr6 (11-157)||(28788470-28788616)
chr6 (11-200)||(26804698-26804887)
chr6 (11-251)||(26648664-26648904)
chr6 (11-251)||(26754632-26754872)
chr6 (42-227)||(25076064-25076249)
chr6 (38-178)||(27716311-27716451)
chr6 (11-222)||(26637738-26637949)
chr6 (11-222)||(26743704-26743915)
chr6 (91-167)||(27663038-27663114)
chr6 (75-200)||(28788631-28788756)
chr6 (32-219)||(27425366-27425553)
chr6 (49-234)||(26979630-26979815)
chr6 (22-156)||(26625463-26625597)
chr6 (22-156)||(26731440-26731574)
chr6 (74-167)||(28524455-28524548)
chr6 (70-161)||(28190609-28190700)
chr6 (59-161)||(26939264-26939366)
chr6 (69-158)||(28238594-28238683)
chr6 (58-200)||(28141844-28141986)
chr6 (91-131)||(2187151-2187191)
chr6 (114-162)||(26145282-26145330)
chr6 (69-161)||(28327814-28327906)
chr6 (69-161)||(28505450-28505542)
[»] chr1 (4 HSPs)
chr1 (33-255)||(28125427-28125649)
chr1 (32-234)||(266086-266288)
chr1 (29-255)||(26138134-26138360)
chr1 (38-236)||(28130477-28130682)
[»] chr4 (7 HSPs)
chr4 (11-227)||(18721872-18722088)
chr4 (11-255)||(18729266-18729510)
chr4 (11-227)||(18677358-18677574)
chr4 (11-227)||(18653276-18653492)
chr4 (11-227)||(18687413-18687629)
chr4 (11-227)||(18697201-18697417)
chr4 (32-219)||(18076002-18076189)
[»] scaffold0277 (2 HSPs)
scaffold0277 (11-200)||(11443-11632)
scaffold0277 (11-227)||(2453-2669)
[»] scaffold1870 (1 HSPs)
scaffold1870 (11-227)||(998-1214)
[»] scaffold0419 (1 HSPs)
scaffold0419 (11-227)||(9717-9933)
[»] chr8 (3 HSPs)
chr8 (34-186)||(29271642-29271794)
chr8 (32-131)||(22023479-22023578)
chr8 (102-153)||(15038975-15039026)
[»] scaffold0349 (1 HSPs)
scaffold0349 (38-178)||(15494-15634)
[»] chr2 (1 HSPs)
chr2 (108-205)||(17991003-17991100)
[»] scaffold0003 (1 HSPs)
scaffold0003 (32-219)||(61810-61997)
[»] scaffold0019 (1 HSPs)
scaffold0019 (69-161)||(56116-56208)
[»] scaffold0038 (1 HSPs)
scaffold0038 (69-158)||(38756-38845)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 47)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 26658161 - 26658405
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26658161 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttctcatttcgaaattgtgctaa 26658260  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26658261 tttaattacaattcacaattcagttggatacctaaataaacttgaaatcttagatgcatatggttgcagaaagatcgtaagttttccacccttacggctt 26658360  T
Q  211 ccctctcttaaggaatttgaactcagttggtgtaagagtctcaag 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  26658361 ccctctcttaaggaatttcaactcagttggtgtaagagtctcaag 26658405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 26764132 - 26764376
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26764132 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttctcatttcgaaattgtgctaa 26764231  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26764232 tttaattacaattcacaattcagttggatacctaaataaacttgaaatcttagatgcatatggttgcagaaagatcgtaagttttccacccttacggctt 26764331  T
Q  211 ccctctcttaaggaatttgaactcagttggtgtaagagtctcaag 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  26764332 ccctctcttaaggaatttcaactcagttggtgtaagagtctcaag 26764376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 25513079 - 25513301
Alignment:
Q  33 ttgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattca 132  Q
    ||||||||||||||||||||||||| ||||||| |||||  ||||| |||||||||| | ||||||| |||||| || ||||||||||||||||| |||     
T  25513079 ttgtgaatatttaacccatatacccgatgtctcgggtcttccaaatctagaaaagttcttatttcgatattgtgatagtttaattacaattcacatttcg 25513178  T
Q  133 gttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatttgaac 232  Q
     ||||  ||||||||||||||||||||||| || ||| ||||||||| || |  |    ||| |||||||||| ||| |||||||||||| ||||||||     
T  25513179 attggacacctaaataaacttgaaatcttaaatacatgtggttgcagcaaacctgagcttttcccacccttacagctgccctctcttaagaaatttgaaa 25513278  T
Q  233 tcagttggtgtaagagtctcaag 255  Q
    ||  | |||||||||||||||||    
T  25513279 tctctgggtgtaagagtctcaag 25513301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 27609098 - 27608909
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||| || |||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| || |||  |  ||||| |||    
T  27609098 tgaaagtcttgacattgaactattgtgaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttacatgttgtgataa 27608999  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacc 200  Q
    |||||||||||||||||||||  ||||  |||||||||||||||||   |||  ||||||||||||||||||||||| | ||||||||||    
T  27608998 tttaattacaattcacaattctattggacacctaaataaacttgaatggttaagtgcatatggttgcagaaagctcgaacgttttccacc 27608909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 27681166 - 27681342
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| |||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| || |||  |  ||||| |||    
T  27681166 tgaaagtcttgacattggactattgtgaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttacatgttgtgataa 27681265  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcg 187  Q
    |||||||||||||||||||||  ||||  |||||||||||||||||   |||  |||||||||||||||||||||||    
T  27681266 tttaattacaattcacaattctattggacacctaaataaacttgaatggttaagtgcatatggttgcagaaagctcg 27681342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 26886288 - 26886532
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||| ||| |||||||||||||||||||| |||||||||||||||||||   ||||||||||||||| ||| ||  |||  ||  |||    
T  26886288 tgaaagtcttgacatttgacaattgtgaatatttaacccatgtacccaatgtctcaggtcttctaaatttagaaaagttctcagttgaaaagagtaataa 26886387  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    |||||||||||||||| ||||  ||||| | ||||||||||||||||||||| ||||  |    ||||  ||||| |  |||||||||||||||| |||     
T  26886388 tttaattacaattcacgattcgattgggaagctaaataaacttgaaatcttaaatgcgaagaaatgcatcaagcttgagagttttccacccttacagctg 26886487  T
Q  211 ccctctcttaaggaatttgaactcagttggtgtaagagtctcaag 255  Q
    |||||||| |||||||||||||||  ||  |||| ||||||||||    
T  26886488 ccctctctcaaggaatttgaactctcttattgtaggagtctcaag 26886532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 28794591 - 28794780
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| | |||||||||||||||||||||||  |||||||||||||   |||||| |||||||| || |||  | |||||  |||    
T  28794591 tgaaagtcttgacattggacaagtgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttggaaaagttctcgtttgcatattgtcgtaa 28794690  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacc 200  Q
     ||||||||||||||||||||| ||||  ||||||||||||||||||  |||  ||||||||||||||| ||||||| | ||||||||||    
T  28794691 attaattacaattcacaattcaattggacacctaaataaacttgaaaggttaagtgcatatggttgcagcaagctcgaacgttttccacc 28794780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 25485229 - 25485397
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||   ||||||||||||||||||||||||| ||||||| |||||  ||||| |||||||||  ||||||||| |||||  ||     
T  25485229 tgaaagtcttgacattggatttttgtgaatatttaacccatatacccgatgtctcgggtcttccaaatctagaaaagtgctcatttcgatattgttttag 25485328  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcag 179  Q
    |||||||||||||| || |||  ||||  ||||||||||||||||||||||| ||||||||||||||||    
T  25485329 tttaattacaattcccagttcgattggacacctaaataaacttgaaatcttaaatgcatatggttgcag 25485397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 26850860 - 26851067
Alignment:
Q  20 tgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattac 119  Q
    |||||||||||| || | ||||||||||||||||| |  ||||||| || ||  |||||||||||||| | |||||||    ||||  || |||||||||    
T  26850860 tgacattggacggttctaaatatttaacccatatatctgatgtctctggacttccaaatttagaaaagctctcatttcattgttgtcatagtttaattac 26850959  T
Q  120 aattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctctt 219  Q
    ||||||||||||| |||||||||| | |||||||||||||||||||||||  |||||||  ||||| |  ||||||||||||||||   | |||||||||    
T  26850960 aattcacaattcaattgggtacctgattaaacttgaaatcttagatgcatggggttgcaacaagcttgagagttttccacccttacaattgccctctctt 26851059  T
Q  220 aaggaatt 227  Q
    ||||||||    
T  26851060 aaggaatt 26851067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 27675545 - 27675344
Alignment:
Q  24 attggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaatt 123  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| || |||  |  ||||  ||||||||||||||||    
T  27675545 attggaccattgtgaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttgaatgttgttataatttaattacaatt 27675446  T
Q  124 cacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaagg 223  Q
    ||||||||  ||||  ||||||| ||||||||||  |||  ||||| ||||||||||||||||  | |||||||||| ||| || |  | ||||||||||    
T  27675445 cacaattcgattggacacctaaacaaacttgaaaggttaagtgcatttggttgcagaaagctcaaacgttttccacctttagggttggcatctcttaagg 27675346  T
Q  224 aa 225  Q
    ||    
T  27675345 aa 27675344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 26951959 - 26952115
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| || |||| |||||||| ||||||||| |||||||||||||  |||||||| |||| || ||||||| |  ||||| ||     
T  26951959 tgaaaatcttgacattggacaatagtgactatttaactcatatacccgatgtctcaggtcttccaaatttaaaaaacttctcatttcaaggttgtgttag 26952058  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgc 167  Q
     |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  26952059 gttaattacaattcacaattcggttgggtacctaaataaacttaaaatcttaaatgc 26952115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 27590948 - 27590772
Alignment:
Q  24 attggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaatt 123  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| ||||||  | |||||   |||||||||||||||    
T  27590948 attggaccattgtgaatatttaacacatatacccgatgtctcagggctttcaaatttagaaaagttatcatttgaatattgtaagaatttaattacaatt 27590849  T
Q  124 cacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacc 200  Q
    ||||||||  ||||  ||||||||||||||||||  |||  ||||| ||||||||| | ||||  | ||||||||||    
T  27590848 cacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttgcaggacgctcaaacgttttccacc 27590772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 27704186 - 27704027
Alignment:
Q  20 tgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattac 119  Q
    ||||||||||| ||||| |||||||||| ||||||||| |||||||||| || ||||||||||||||||| || |||  | |||||| ||||||||||||    
T  27704186 tgacattggaccattgtaaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttgaatattgtgataatttaattac 27704087  T
Q  120 aattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcag 179  Q
     |||||||||||  ||||  ||||||||||||||||||  |||  ||||| |||||||||    
T  27704086 gattcacaattcgattggccacctaaataaacttgaaaggttaagtgcatttggttgcag 27704027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 25581919 - 25582109
Alignment:
Q  41 atttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggta 140  Q
    ||||||||||||||||| ||||||| |||||  ||||| |||||||||  ||||||| |  ||||  || ||||||||||||||||| |||  ||||  |    
T  25581919 atttaacccatatacccgatgtctcgggtcttccaaatctagaaaagtgctcatttcaattttgttttagtttaattacaattcacagttcgattggaca 25582018  T
Q  141 cctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatttgaa 231  Q
    |||||||||||||||||||||| |||||||||||||||| || || |    ||| |||||||||| ||| |||||||||||| ||||||||    
T  25582019 cctaaataaacttgaaatcttaaatgcatatggttgcagcaaacttgagcatttcccacccttacagctgccctctcttaagaaatttgaa 25582109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 26863790 - 26863984
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||| ||||||| |||||||||||||||||  ||||||||||||||| | |||  |||||||||||||||| |  |||  |||||||  |||    
T  26863790 tgaaagtcttgatattggactattgtgaatatttaacctgtatacccaatgtctccgatcttccaaatttagaaaagttgttgtttataaattgtcataa 26863889  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttac 205  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||| | ||  |||| |   |||||| |||||||  ||||||||||||||||    
T  26863890 tttaattacaattcacaactcgattgggtacctaaataaacttgaaaccctaattgcaaagtattgcagcaagctcgagagttttccacccttac 26863984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 26058097 - 26058309
Alignment:
Q  19 atgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaatta 118  Q
    ||||||||||||| || | |||||||||||||||||||| |||||||||||||  ||||| |||||||||  || ||||||   |||| || ||||||||    
T  26058097 atgacattggacggttctcaatatttaacccatatacccgatgtctcaggtcttccaaatctagaaaagtgctcctttcgaggatgtgatagtttaatta 26058196  T
Q  119 caattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctct 218  Q
     |||||||| |||  ||||  | |||||||||||||||||||||||| ||| |||||||||  | || |    ||| |||||||||| ||| ||||||||    
T  26058197 aaattcacagttcgattggacatctaaataaacttgaaatcttagatacatttggttgcagcgaacttgagcatttcccacccttacagctgccctctct 26058296  T
Q  219 taaggaatttgaa 231  Q
    |||| ||||||||    
T  26058297 taagaaatttgaa 26058309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 26078067 - 26078279
Alignment:
Q  19 atgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaatta 118  Q
    ||||||||||||| || | |||||||||||||||||||| |||||||||||||  ||||| |||||||||  || ||||||   |||| || ||||||||    
T  26078067 atgacattggacggttctcaatatttaacccatatacccgatgtctcaggtcttccaaatctagaaaagtgctcctttcgaggatgtgatagtttaatta 26078166  T
Q  119 caattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctct 218  Q
     |||||||| |||  ||||  | |||||||||||||||||||||||| ||| |||||||||  | || |    ||| |||||||||| ||| ||||||||    
T  26078167 aaattcacagttcgattggacatctaaataaacttgaaatcttagatacatttggttgcagcgaacttgagcatttcccacccttacagctgccctctct 26078266  T
Q  219 taaggaatttgaa 231  Q
    |||| ||||||||    
T  26078267 taagaaatttgaa 26078279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 26145063 - 26145251
Alignment:
Q  39 atatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttggg 138  Q
    ||||||||||||||||||| |||||||||||||  ||||| |||||||||  || |||| ||| ||||  | |||||||| |||||||| |||  ||||     
T  26145063 atatttaacccatatacccgatgtctcaggtcttccaaatctagaaaagtgctcctttcaaaactgtgaaagtttaattagaattcacagttcgattgga 26145162  T
Q  139 tacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatt 227  Q
     ||||||||||||||||||||||| |||||| ||||||||| ||||| |    |||||||||||||| ||| | |||||||||| ||||    
T  26145163 cacctaaataaacttgaaatcttaaatgcatctggttgcagcaagcttgagcattttccacccttacagctgctctctcttaagaaatt 26145251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 27602679 - 27602544
Alignment:
Q  33 ttgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattca 132  Q
    |||| ||||||||||||| |||||| |||||||||| ||  |||||||||||||||| || |||| |  |||||  ||||||||||||||||||||||||    
T  27602679 ttgtcaatatttaacccaaatacccgatgtctcaggacttccaaatttagaaaagttatcgtttcaattttgtgagaatttaattacaattcacaattca 27602580  T
Q  133 gttgggtacctaaataaacttgaaatcttagatgca 168  Q
    ||||| | |||||| | |||||||||||||||||||    
T  27602579 gttggattcctaaacagacttgaaatcttagatgca 27602544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 231
Target Start/End: Original strand, 25547172 - 25547370
Alignment:
Q  33 ttgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattca 132  Q
    ||||||||||||||||||||||||  ||||||| |||||   |||| |||||||||  || |||||| | |||  || ||||||||||||||||| |||     
T  25547172 ttgtgaatatttaacccatatacctgatgtctcgggtcttcgaaatctagaaaagtgctcctttcgagaatgtcatagtttaattacaattcacagttcg 25547271  T
Q  133 gttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatttgaa 231  Q
     ||||  ||||||||||||||||||||||| ||||||||||||||  | |||| |    ||| |||||||||| ||| |||||||||||| ||||||||    
T  25547272 attggacacctaaataaacttgaaatcttaaatgcatatggttgcttagagcttgagcatttcccacccttacagctgccctctcttaagaaatttgaa 25547370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 27696569 - 27696423
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||| |||||||| | || ||||||||||||||||| || |||  | |||||   ||    
T  27696569 tgaaaatcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaagcctttcaaatttagaaaagttatcgtttgaacattgtaagaa 27696470  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaa 157  Q
    |||||||||||||||||||||  ||||  |||||| |||||||||||    
T  27696469 tttaattacaattcacaattcgattggacacctaagtaaacttgaaa 27696423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 26826017 - 26826249
Alignment:
Q  23 cattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaat 122  Q
    |||||||| | ||| || |||||||||| |||||| |||||||| ||||  |||  |||||||| || ||||||  ||| |||  |||||||||||||||    
T  26826017 cattggacaagtgtcaacatttaacccacatacccgatgtctcatgtcttccaatattagaaaaattctcatttaaaaaatgtcgtaatttaattacaat 26826116  T
Q  123 tcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaag 222  Q
    | |||  ||  ||||||||||| ||||||||||||||||| ||||| |   |||||| |||||||  |||||||||||||||||| | ||||| ||||||    
T  26826117 tgacatctcgattgggtacctagataaacttgaaatcttaaatgcagagaattgcagcaagctcgagagttttccacccttacggttgccctcccttaag 26826216  T
Q  223 gaatttgaactcagttggtgtaagagtctcaag 255  Q
    || ||  |||||  | | |||||||||||||||    
T  26826217 gatttgaaactctctggctgtaagagtctcaag 26826249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 27529253 - 27529045
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||| |||| || |||||||||||||||||||||||||  |||||||||| ||  |||||||||||||||| || |||  ||  |||  |||    
T  27529253 tgaaagtcttgatattgaacaattgtgaatatttaacccatataccggatgtctcagggcttccaaatttagaaaagttctcgtttgtaagatgtcataa 27529154  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    |||| ||||||||||||||||| || | |||||||||| | | ||||||||| ||||| | ||||||   |||||||  |||||||||||||||| |  |    
T  27529153 tttagttacaattcacaattcacttagatacctaaatagattagaaatcttaaatgcagagggttgcgagaagctcgagagttttccacccttacagtct 27529054  T
Q  211 ccctctctt 219  Q
    |||||||||    
T  27529053 ccctctctt 27529045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 31286758 - 31286981
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||||| |||| ||||| ||||||  |  ||||   ||    
T  31286758 tgaaagtcttgacattggacgattgtgaatatttaacacatatacctgatgtctcaggtctttcaaatatagagaagttctcatttaaattttgtagaaa 31286857  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||||||||| || ||||| ||||  ||| ||||||||||||| || ||  ||||  ||||||||| ||||||    |||||||||||||| |  |     
T  31286858 tttaattacaattgacgattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggtttg 31286957  T
Q  211 ccctctcttaaggaatttgaactc 234  Q
     | |||||||||||||| ||||||    
T  31286958 gcatctcttaaggaattggaactc 31286981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 28788470 - 28788616
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| | |||||||||||||||||||||||  |||||||||||||   |||||| |||||||| || |||  | |||||  |||    
T  28788470 tgaaagtcttgacattggacaagtgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttggaaaagttctcgtttgcatattgtcgtaa 28788569  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaa 157  Q
     ||||||||||||||||||||| ||||  ||||||||||||||||||    
T  28788570 attaattacaattcacaattcaattggacacctaaataaacttgaaa 28788616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 26804698 - 26804887
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||||||  ||||||||||||||| |||||  || ||||||||||   ||||||||||||||| || |||  | ||||||  ||    
T  26804698 tgaaagtcttgacattggacgataatgaatatttaacccacatacctgatctctcaggtcttcaaaatttagaaaagttctcgtttaaatattgtgagaa 26804797  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacc 200  Q
    ||||||||||||| |||||||  ||||  ||||||||||||||||||  |||  ||||| ||||||||| ||||| | | ||||||||||    
T  26804798 tttaattacaattgacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttgcagcaagcttgaacgttttccacc 26804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 26648664 - 26648904
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||| ||  ||||||||||||||| ||||||||  ||||||||| |||   ||||||||||||||| ||||||     ||||   ||    
T  26648664 tgaaagtcttgacattgaactgttgtgaatatttaactcatatacctgatgtctcagatcttcaaaatttagaaaagttctcatttatgttttgtaagaa 26648763  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||||||||| || | ||| ||||| |||||||||||||||||| ||||||||||  | ||||||| ||||||    |||||||||||||| || |     
T  26648764 tttaattacaattgacgactcaattgggcacctaaataaacttgaaagcttagatgcaggttgttgcagcaagctcaagcgttttccacccttagggttg 26648863  T
Q  211 ccctctcttaaggaatttgaactcagttggtgtaagagtct 251  Q
     | ||||||||| |||| ||||||||| | ||| |||||||    
T  26648864 acatctcttaagcaattggaactcagtggttgtgagagtct 26648904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 26754632 - 26754872
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||| ||  ||||||||||||||| ||||||||  ||||||||| |||   ||||||||||||||| ||||||     ||||   ||    
T  26754632 tgaaagtcttgacattgaactgttgtgaatatttaactcatatacctgatgtctcagatcttcaaaatttagaaaagttctcatttatgttttgtaagaa 26754731  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||||||||| || | ||| ||||| |||||||||||||||||| ||||||||||  | ||||||| ||||||    |||||||||||||| || |     
T  26754732 tttaattacaattgacgactcaattgggcacctaaataaacttgaaagcttagatgcaggttgttgcagcaagctcaagcgttttccacccttagggttg 26754831  T
Q  211 ccctctcttaaggaatttgaactcagttggtgtaagagtct 251  Q
     | ||||||||| |||| ||||||||| | ||| |||||||    
T  26754832 acatctcttaagcaattggaactcagtggttgtgagagtct 26754872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 25076064 - 25076249
Alignment:
Q  42 tttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtac 141  Q
    |||||| ||||||||| |||||||||||||  |||||||||||||| | |||||   ||| |||   || ||||||||||||||||||||| |||| | |    
T  25076064 tttaactcatatacccgatgtctcaggtcttccaaatttagaaaagatctcattaaaaaagtgttggaacttaattacaattcacaattcaattggatgc 25076163  T
Q  142 ctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatt 227  Q
    |||| ||||||||||||| || |||||      |||   ||||||  ||||||||||||||||||||| |||||||||||||||||    
T  25076164 ctaagtaaacttgaaatcataaatgcaaggaaatgctataagctcaaaagttttccacccttacggctgccctctcttaaggaatt 25076249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 178
Target Start/End: Complemental strand, 27716451 - 27716311
Alignment:
Q  38 aatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgg 137  Q
    |||||||||| ||||||||| |||||||||| || ||||||||||||||||| || |||  ||  |||  ||||||||||||||||||||||||  ||||    
T  27716451 aatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttgaaagatgttataatttaattacaattcacaattcgattgg 27716352  T
Q  138 gtacctaaataaacttgaaatcttagatgcatatggttgca 178  Q
      |||| |||||||||||||  |||  ||||||||||||||    
T  27716351 acaccttaataaacttgaaaggttaagtgcatatggttgca 27716311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 26637738 - 26637949
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||| || ||||| | |||||||| ||||||||| ||||||||||||| |||||||| |||||||| || |||  ||| |||   ||    
T  26637738 tgaaagtcttgacattgaaccattgtcactatttaactcatatacccgatgtctcaggtctatcaaattttgaaaagttctcgtttaaaaagtgtaaaaa 26637837  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    || ||||||||||||| ||||  ||||| | |||| ||||||| |||||||| ||||| |   |||||    ||| |  |||||||||||||||||| |     
T  26637838 ttgaattacaattcacgattcgattgggcagctaagtaaacttaaaatcttaaatgcaaaaaattgcaactcgctagagagttttccacccttacggttg 26637937  T
Q  211 ccctctcttaag 222  Q
    ||||||||||||    
T  26637938 ccctctcttaag 26637949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 26743704 - 26743915
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||| || ||||| | |||||||| ||||||||| ||||||||||||| |||||||| |||||||| || |||  ||| |||   ||    
T  26743704 tgaaagtcttgacattgaaccattgtcactatttaactcatatacccgatgtctcaggtctatcaaattttgaaaagttctcgtttaaaaagtgtaaaaa 26743803  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    || ||||||||||||| ||||  ||||| | |||| ||||||| |||||||| ||||| |   |||||    ||| |  |||||||||||||||||| |     
T  26743804 ttgaattacaattcacgattcgattgggcagctaagtaaacttaaaatcttaaatgcaaaaaattgcaactcgctagagagttttccacccttacggttg 26743903  T
Q  211 ccctctcttaag 222  Q
    ||||||||||||    
T  26743904 ccctctcttaag 26743915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 27663114 - 27663038
Alignment:
Q  91 tcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgc 167  Q
    ||||||| |||||||   ||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27663114 tcatttcaaaattgtaaaaatttaactacaattcacaattcagttgggtacctttataaacttgaaatcttagatgc 27663038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 28788631 - 28788756
Alignment:
Q  75 aaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggt 174  Q
    |||||| |||||||| || |||  | |||||  ||| ||||||||||||||||||||| ||||  ||||||||||||||||||  ||| |||||| || |    
T  28788631 aaatttggaaaagttctcgtttgcatattgtcgtaaattaattacaattcacaattcaattggacacctaaataaacttgaaaggttaaatgcatttgat 28788730  T
Q  175 tgcagaaagctcgtaagttttccacc 200  Q
    ||||| || |||| ||||||||||||    
T  28788731 tgcagcaaactcgaaagttttccacc 28788756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 27425553 - 27425366
Alignment:
Q  32 attgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattc 131  Q
    ||||| || |||||| | ||| |||| |||||||| | ||  |||||||||||||||| || |||  ||  |||  ||||||| ||||||||||||||||    
T  27425553 attgtcaagatttaatctatacacccgatgtctcatggcttccaaatttagaaaagttctcgtttgcaagatgtcataatttagttacaattcacaattc 27425454  T
Q  132 agttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctctt 219  Q
    | || | |||||||||| | | ||||||||| ||||| | ||||||   |||||||  |||||||||||||||| |  ||||||||||    
T  27425453 acttagatacctaaatagattagaaatcttaaatgcagagggttgcgagaagctcgagagttttccacccttacagtctccctctctt 27425366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 26979630 - 26979815
Alignment:
Q  49 catatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaata 148  Q
    ||||||||||||||||||||||||| |||||||  |||||| ||||||  ||| |||   |||||||||| |||| |||||||  || || | |||||||    
T  26979630 catatacccaatgtctcaggtctctaaaatttaataaagttctcatttaaaaaatgtcggaatttaattaaaattgacaattccatttggaagctaaata 26979729  T
Q  149 aacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatttgaactc 234  Q
    | ||||||  ||||  ||   | ||||||   |||||||  ||||||||||||||||   | ||||||||||||||||| ||||||    
T  26979730 agcttgaacacttaagtgtgaagggttgcctcaagctcgagagttttccacccttacatttgccctctcttaaggaattggaactc 26979815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 26625463 - 26625597
Alignment:
Q  22 acattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaa 121  Q
    ||||||||||| |||||| ||||||| ||||||||| || ||||||| || ||||||||| |||||||  |||||     ||||   |||||||||||||    
T  26625463 acattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaa 26625562  T
Q  122 ttcacaattcagttgggtacctaaataaacttgaa 156  Q
    || |  | ||| ||||| |||||||||||||||||    
T  26625563 ttgatgactcaattgggcacctaaataaacttgaa 26625597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 26731440 - 26731574
Alignment:
Q  22 acattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaa 121  Q
    ||||||||||| |||||| ||||||| ||||||||| || ||||||| || ||||||||| |||||||  |||||     ||||   |||||||||||||    
T  26731440 acattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaa 26731539  T
Q  122 ttcacaattcagttgggtacctaaataaacttgaa 156  Q
    || |  | ||| ||||| |||||||||||||||||    
T  26731540 ttgatgactcaattgggcacctaaataaacttgaa 26731574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 28524455 - 28524548
Alignment:
Q  74 caaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgc 167  Q
    ||||||||||||  ||||||||||||| |||||  |||||||||   |||||||| || ||||||| ||||||||||||| || |||| |||||    
T  28524455 caaatttagaaatattttcatttcgaagttgtgaaaatttaattgagattcacaaatctgttgggttcctaaataaacttcaagtcttggatgc 28524548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 28190609 - 28190700
Alignment:
Q  70 ctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaatctt 161  Q
    ||||||||||||||||  |||||||||| | | |||   |||||||||  ||||||||| || ||||||| |||||||||||||||| ||||    
T  28190609 ctctcaaatttagaaatattttcatttcaacagtgtaagaatttaattgaaattcacaaatctgttgggttcctaaataaacttgaagtctt 28190700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 26939264 - 26939366
Alignment:
Q  59 atgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaat 158  Q
    |||||||| ||||  |||||||||||||  |||||||   ||||||||  |||||||||||| |||| |||||| |||| |  || ||||||||||||||    
T  26939264 atgtctcatgtcttccaaatttagaaaatatttcattcacaaattgtgtcaatttaattacagttcataattcaattggatttctgaataaacttgaaat 26939363  T
Q  159 ctt 161  Q
    |||    
T  26939364 ctt 26939366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 28238594 - 28238683
Alignment:
Q  69 tctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaat 158  Q
    |||| ||||||||||||  |||||||||| | | |||   |||||||||  ||||||||| || ||||||| ||||||||||||||||||    
T  28238594 tctcccaaatttagaaatattttcatttcaatactgtaagaatttaattgaaattcacaaatctgttgggttcctaaataaacttgaaat 28238683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 28141844 - 28141986
Alignment:
Q  58 aatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaa 157  Q
    ||||| || |||||| ||||||||||||  |||||||||| |  ||||   |||||||||||| | |||||||| |||||||   ||||||||||  |||    
T  28141844 aatgtatccggtctcccaaatttagaaacattttcatttcaatgttgtaagaatttaattacagtacacaattctgttgggttattaaataaactcaaaa 28141943  T
Q  158 tcttagatgcatatggttgcagaaagctcgtaagttttccacc 200  Q
    ||||  ||||  |  ||||||| ||||||  ||||||||||||    
T  28141944 tcttgaatgctaagcgttgcagcaagctcacaagttttccacc 28141986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 2187151 - 2187191
Alignment:
Q  91 tcatttcgaaattgtgctaatttaattacaattcacaattc 131  Q
    ||||||||| ||||| | |||||||||||||||||||||||    
T  2187151 tcatttcgagattgttcgaatttaattacaattcacaattc 2187191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 26145282 - 26145330
Alignment:
Q  114 aattacaattcacaattcagttgggtacctaaataaacttgaaatctta 162  Q
    ||||||||||||||| ||  ||||  |||||||||||||||||||||||    
T  26145282 aattacaattcacaactcgattggacacctaaataaacttgaaatctta 26145330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 28327814 - 28327906
Alignment:
Q  69 tctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaatctt 161  Q
    |||| ||||||||||||  |||||||||| |  ||||   |||||||||  ||||||||  ||  |||||| |||||||||||||||||||||    
T  28327814 tctcccaaatttagaaatattttcatttcaaggttgtaagaatttaattgaaattcacagatcgtttgggttcctaaataaacttgaaatctt 28327906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 28505450 - 28505542
Alignment:
Q  69 tctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaatctt 161  Q
    |||| ||||||||||||  |||||||||| |  ||||   |||||||||  ||||||||  ||  |||||| |||||||||||||||||||||    
T  28505450 tctcccaaatttagaaatattttcatttcaaggttgtaagaatttaattgaaattcacagatcgtttgggttcctaaataaacttgaaatctt 28505542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 33 - 255
Target Start/End: Complemental strand, 28125649 - 28125427
Alignment:
Q  33 ttgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattca 132  Q
    ||||||||||||||||||||||||| ||||||||  |||  |||||||||||||||| ||||||  | |||||| ||||||||||||||||||||||||     
T  28125649 ttgtgaatatttaacccatatacccgatgtctcacatcttccaaatttagaaaagttctcatttgcatattgtgataatttaattacaattcacaattcg 28125550  T
Q  133 gttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatttgaac 232  Q
     ||||||||||||||||||||||| ||||||||||| | |||||||| |||||||  |||||||| ||||||| | |  ||| ||||||||||||  |||    
T  28125549 attgggtacctaaataaacttgaagtcttagatgcagaaggttgcagcaagctcgagagttttccccccttacagttgacctgtcttaaggaattgaaac 28125450  T
Q  233 tcagttggtgtaagagtctcaag 255  Q
    |||||   ||| |||||||||||    
T  28125449 tcagtgaatgtgagagtctcaag 28125427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 266288 - 266086
Alignment:
Q  32 attgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattc 131  Q
    ||||||||||||||||||||||| |  |||||||||| ||  | |||||| ||||| | ||||||  | |||||   |||||||||||||||||||||||    
T  266288 attgtgaatatttaacccatatatctgatgtctcaggacttcctaatttaaaaaagctctcatttaaagattgtaagaatttaattacaattcacaattc 266189  T
Q  132 agttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatttgaa 231  Q
    |||||||||||||| ||||||||||||||||||||||   ||||||||||||||    ||||||||||||||||  || ||||||||||||||| | |||    
T  266188 agttgggtacctaattaaacttgaaatcttagatgcaatgggttgcagaaagctaaagagttttccacccttacaactgccctctcttaaggaaatggaa 266089  T
Q  232 ctc 234  Q
    |||    
T  266088 ctc 266086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 26138134 - 26138360
Alignment:
Q  29 acgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaa 128  Q
    |||||||| ||||||||||  || ||||| |||||||||||||   ||||||||||||||| ||||||  |||||||   ||||||||||||||||||||    
T  26138134 acgattgtcaatatttaactgatctacccgatgtctcaggtcttcaaaatttagaaaagttctcatttgaaaattgtaacaatttaattacaattcacaa 26138233  T
Q  129 ttcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaattt 228  Q
    |||| |||||| ||||||||||||||||| |||| ||||| | |||||||  |||||||  |||||||||||||||| | |  ||||||||||| ||||     
T  26138234 ttcaattgggttcctaaataaacttgaaaccttaaatgcaaagggttgcatcaagctcgagagttttccacccttacagttgacctctcttaagaaattg 26138333  T
Q  229 gaactcagttggtgtaagagtctcaag 255  Q
    ||||||  |   |||||||||||||||    
T  26138334 gaactctctatttgtaagagtctcaag 26138360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 28130682 - 28130477
Alignment:
Q  38 aatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattca----- 132  Q
    ||||||||||| |||||||||||||||||  |||  |||||||||||||||| ||||||  |||||||| |||||||||||||||||||||||||         
T  28130682 aatatttaaccaatatacccaatgtctcacatcttccaaatttagaaaagttctcatttgaaaattgtgataatttaattacaattcacaattcacaatt 28130583  T
Q  133 --gttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctcttaaggaatttga 230  Q
       ||||||||||||||||||||||| ||||| ||||| | |||||||| ||||||   | |||||| ||||||||| |  | |||||||||||||| ||    
T  28130582 ctattgggtacctaaataaacttgaagtcttaaatgcaaagggttgcaggaagctcaagaattttccccccttacggttgacttctcttaaggaattgga 28130483  T
Q  231 actcag 236  Q
    ||||||    
T  28130482 actcag 28130477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 18722088 - 18721872
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| | ||| ||||||||||||||||||||||||||||||||||  ||||||||||||| || || ||||||  ||||| |||    
T  18722088 tgaaagtcttgacattggacaagtgtcaatatttaacccatatacccaatgtctcaggtcttccaaatttagaaaaattctcgtttcgattttgtgataa 18721989  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||| || ||||| ||||  ||||| ||||||||||||||||||||||| |||||| ||| ||||  ||||| |  ||||||||||||||| ||||     
T  18721988 tttaattgcagttcacgattcgattgggaacctaaataaacttgaaatcttaaatgcatctggatgcatcaagcttgagagttttccacccttatggctg 18721889  T
Q  211 ccctctcttaaggaatt 227  Q
    ||||||||| |||||||    
T  18721888 ccctctcttgaggaatt 18721872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 18729510 - 18729266
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| | ||| ||||||||||||||||||||||||||||||||||  ||||||||||||| || || |||| | ||||||  ||    
T  18729510 tgaaagtcttgacattggacaagtgtcaatatttaacccatatacccaatgtctcaggtcttccaaatttagaaaaattctcgtttcaatattgtgacaa 18729411  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||| |||||||| ||||  ||||| | ||||||||||||||||||||| ||||||  || ||||  ||||| |  | |||||||||||| |||||     
T  18729410 tttaattgcaattcacgattcgattgggaagctaaataaacttgaaatcttaaatgcatggggatgcatcaagcttgagaattttccacccttgcggctg 18729311  T
Q  211 ccctctcttaaggaatttgaactcagttggtgtaagagtctcaag 255  Q
    ||||||||||||||||| || |||| ||  |||||||| ||||||    
T  18729310 ccctctcttaaggaattggacctcacttattgtaagagactcaag 18729266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 18677574 - 18677358
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| |||||  |||||||||||||||||||||||||||||||||  ||||||||||||| || || ||||||  ||||| |||    
T  18677574 tgaaagtcttgacattggactattgtctatatttaacccatatacccaatgtctcaggtcttccaaatttagaaaaattctcgtttcgattttgtgataa 18677475  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||| |||||||| ||||  ||||| ||||||||||||||||||||||| ||||||  |  ||||  ||||| |  | ||||||||||||| ||||     
T  18677474 tttaattgcaattcacgattcgattgggaacctaaataaacttgaaatcttaaatgcatgggcatgcaccaagcttgagaattttccacccttatggctg 18677375  T
Q  211 ccctctcttaaggaatt 227  Q
    |||||||| ||||||||    
T  18677374 ccctctctgaaggaatt 18677358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 18653492 - 18653276
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||  | ||||||||| | || || |||| |  ||||  |||    
T  18653492 tgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtcttaggtcttcctaatttagaataattctcgtttcaattttgtattaa 18653393  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||| |||||||| ||||  ||||| |||||||||||||||||||| || ||||||  || ||||| ||||| |  ||||||||||||||| ||||     
T  18653392 tttaattgcaattcacgattcgattgggaacctaaataaacttgaaatcataaatgcatggggatgcaggaagcttgagagttttccacccttatggctg 18653293  T
Q  211 ccctctcttaaggaatt 227  Q
    |||||||||||||||||    
T  18653292 ccctctcttaaggaatt 18653276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 18687629 - 18687413
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||  ||||||||||| | || || |||  | |||||  |||    
T  18687629 tgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtcttaggtcttccaaatttagaataattctcgttttaatattgtaataa 18687530  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||| |||||||| ||||  || || |||||||||||||||||||| || |||||| ||| ||||| ||||| |  ||||||||||||||| ||||     
T  18687529 tttaattgcaattcacgattcgatttggaacctaaataaacttgaaatcataaatgcatgtggatgcagtaagcttgagagttttccacccttatggctg 18687430  T
Q  211 ccctctcttaaggaatt 227  Q
    |||||||| ||||||||    
T  18687429 ccctctctgaaggaatt 18687413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 18697417 - 18697201
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||| | || || |||  ||| |||   ||    
T  18697417 tgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtctcaggtcttccaaatttagaagaattctcgtttgaaaaatgtaacaa 18697318  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    ||||||| |||||||| ||||  || || |||||||||||||||||||| || |||||| ||| ||||| ||||| |  ||||||||||||||| ||||     
T  18697317 tttaattgcaattcacgattcgattaggaacctaaataaacttgaaatcataaatgcatgtggatgcagcaagcttgagagttttccacccttatggctg 18697218  T
Q  211 ccctctcttaaggaatt 227  Q
    |||||||| ||||||||    
T  18697217 ccctctctgaaggaatt 18697201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 18076002 - 18076189
Alignment:
Q  32 attgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattc 131  Q
    ||||| || |||||| | ||| |||| |||||||| | ||  |||||||||||||||| || |||  ||  |||  ||||||| ||||||||||||||||    
T  18076002 attgtcaagatttaatctatacacccgatgtctcatggcttccaaatttagaaaagttctcgtttgcaagatgtcataatttagttacaattcacaattc 18076101  T
Q  132 agttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctctt 219  Q
    | || | |||||||||| | | ||||||||| ||||| | ||||||   |||||||  |||||||||||||||| |  ||||||||||    
T  18076102 acttagatacctaaatagattagaaatcttaaatgcagagggttgcgagaagctcgagagttttccacccttacagtctccctctctt 18076189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 11632 - 11443
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || ||||||||||| | |||||||||||||||||||||||  |||||||||||||   |||||| |||||||| || |||  | |||||  |||    
T  11632 tgaaagtcttgacattggacaagtgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttggaaaagttctcgtttgcatattgtcgtaa 11533  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacc 200  Q
     ||||||||||||||||||||| ||||  ||||||||||||||||||  ||| |||||| || |||||| || |||| ||||||||||||    
T  11532 attaattacaattcacaattcaattggacacctaaataaacttgaaaggttaaatgcatttgattgcagcaaactcgaaagttttccacc 11443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 2669 - 2453
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||||||   |||||||||||||||||||||||  |||||||||||||   ||||||||||||||| || |||  | ||||||  ||    
T  2669 tgaaaatcttgacattggacaggtgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttagaaaagttctcctttgaatattgtgagaa 2570  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    |||||||||||||||||||||| ||||  |||| |||||||||||||  |||  |||| |||||||||| || |||| | |||||||||| ||| |||||    
T  2569 tttaattacaattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggctt 2470  T
Q  211 ccctctcttaaggaatt 227  Q
     | || ||||| |||||    
T  2469 gcatcccttaatgaatt 2453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 998 - 1214
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||||||   |||||||||||||||||||||||  |||||||||||||   ||||||||||||||| || |||  | ||||||  ||    
T  998 tgaaaatcttgacattggacaggtgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttagaaaagttctcctttgaatattgtgagaa 1097  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    |||||||||||||||||||||| ||||  |||| |||||||||||||  |||  |||| |||||||||| || |||| | |||||||||| ||| |||||    
T  1098 tttaattacaattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggctt 1197  T
Q  211 ccctctcttaaggaatt 227  Q
     | || ||||| |||||    
T  1198 gcatcccttaatgaatt 1214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 9717 - 9933
Alignment:
Q  11 tgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaa 110  Q
    ||||| || |||||||||||   |||||||||||||||||||||||  |||||||||||||   ||||||||||||||| || |||  | ||||||  ||    
T  9717 tgaaaatcttgacattggacaggtgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttagaaaagttctcctttgaatattgtgagaa 9816  T
Q  111 tttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggctt 210  Q
    |||||||||||||||||||||| ||||  |||| |||||||||||||  |||  |||| |||||||||| || |||| | |||||||||| ||| |||||    
T  9817 tttaattacaattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggctt 9916  T
Q  211 ccctctcttaaggaatt 227  Q
     | || ||||| |||||    
T  9917 gcatcccttaatgaatt 9933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 29271794 - 29271642
Alignment:
Q  34 tgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcag 133  Q
    |||||||| ||||| ||||| ||| |||||||||| || ||||||||||||||||| || |||  |||||||| |||||||| |||||||||||||||      
T  29271794 tgtgaatacttaacacatatccccgatgtctcaggcctttcaaatttagaaaagttatcgtttgaaaattgtgataatttaactacaattcacaattcga 29271695  T
Q  134 ttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctc 186  Q
    ||||  ||||||||||||||||||  |||  |||||||| ||||| |||||||    
T  29271694 ttggacacctaaataaacttgaaaggttaagtgcatatgcttgcaaaaagctc 29271642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 22023479 - 22023578
Alignment:
Q  32 attgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattc 131  Q
    ||||||||||||| ||| ||||||  ||||||||||||||  |||||||||||||||| || |||  |||||||   ||||||||||||||| |||||||    
T  22023479 attgtgaatattttacctatatacgtaatgtctcaggtcttccaaatttagaaaagttatcgtttgaaaattgtaagaatttaattacaattgacaattc 22023578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 15038975 - 15039026
Alignment:
Q  102 ttgtgctaatttaattacaattcacaattcagttgggtacctaaataaactt 153  Q
    ||||| ||||||||||||||||||||||||   ||| |||||||||||||||    
T  15038975 ttgtgataatttaattacaattcacaattcgactggatacctaaataaactt 15039026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 15494 - 15634
Alignment:
Q  38 aatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgg 137  Q
    |||||||||| ||||||||| |||||||||| || ||||||||||||||||| || |||  ||  |||  ||||||||||||||||||||||||  ||||    
T  15494 aatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttgaaagatgttataatttaattacaattcacaattcgattgg 15593  T
Q  138 gtacctaaataaacttgaaatcttagatgcatatggttgca 178  Q
      |||| |||||||||||||  |||  ||||||||||||||    
T  15594 acaccttaataaacttgaaaggttaagtgcatatggttgca 15634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 17991100 - 17991003
Alignment:
Q  108 taatttaattacaattcacaattcagttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttac 205  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||| | ||||| || |||||||  |||||||| |||||||    
T  17991100 taatttaattacaattcacgattcgattgggtacctaaataaacttgaaatcttaaatgcacagggttgtagcaagctcgagagttttcctcccttac 17991003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 61810 - 61997
Alignment:
Q  32 attgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattc 131  Q
    ||||| || |||||| | ||| |||| |||||||| | ||  |||||||||||||||| || |||  ||  |||  ||||||| ||||||||||||||||    
T  61810 attgtcaagatttaatctatacacccgatgtctcatggcttccaaatttagaaaagttctcgtttgcaagatgtcataatttagttacaattcacaattc 61909  T
Q  132 agttgggtacctaaataaacttgaaatcttagatgcatatggttgcagaaagctcgtaagttttccacccttacggcttccctctctt 219  Q
    | || | |||||||||| | | ||||||||| ||||| | ||||||   |||||||  |||||||||||||||| |  ||||||||||    
T  61910 acttagatacctaaatagattagaaatcttaaatgcagagggttgcgagaagctcgagagttttccacccttacagtctccctctctt 61997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 56208 - 56116
Alignment:
Q  69 tctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaatctt 161  Q
    |||| ||||||||||||  |||||||||  |||||||   |||||||||  ||||||||| || || |||| |||||||||||||||||||||    
T  56208 tctcccaaatttagaaatattttcatttaaaaattgtaagaatttaattgaaattcacaaatctgtcgggttcctaaataaacttgaaatctt 56116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 38756 - 38845
Alignment:
Q  69 tctctcaaatttagaaaagttttcatttcgaaattgtgctaatttaattacaattcacaattcagttgggtacctaaataaacttgaaat 158  Q
    |||| ||||||||||||  |||||||||| | | |||   |||||||||  ||||||||| || ||||||| ||||||||||||||||||    
T  38756 tctcccaaatttagaaatattttcatttcaatactgtaagaatttaattgaaattcacaaatctgttgggttcctaaataaacttgaaat 38845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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