View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_51 (Length: 249)
Name: NF1500_high_51
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_51 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 24616459 - 24616211
Alignment:
| Q |
10 |
aagaaaatattaatgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgnnnnnnnn-tgataacctgcta--------gtaggcg |
100 |
Q |
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| T |
24616459 |
aagaaaatattaatgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgaaaaaaaaatgataacctgctatcgtagttgtaggcg |
24616360 |
T |
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| Q |
101 |
atggaacggaaaagccactaaagtggatcctccaacaacaagctactaccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttgaagaac |
200 |
Q |
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| T |
24616359 |
atggaacggaaaagccactaaagtggatcctccaacaacaagctactgccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttggagaac |
24616260 |
T |
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| Q |
201 |
agcttgcacttatttttggataccatggcagaggagcggatttttagcc |
249 |
Q |
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| T |
24616259 |
agcttgcacttatttttggataccatggcagaggggcggatttttagcc |
24616211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 24107655 - 24107887
Alignment:
| Q |
21 |
aatgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgnnnnnnnn-tgataacctgcta--------gtaggcgatggaacggaa |
111 |
Q |
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| T |
24107655 |
aatgaagtaaatgtcagaacaaataaacaaagagattgttaatttaagtatgaaaaaataatgataacctgctatcaaagttgtaggtgatggaa-ggaa |
24107753 |
T |
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| Q |
112 |
aagccactaaagtggatcctc-caacaacaagctactaccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttgaagaacagcttgcact |
210 |
Q |
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| T |
24107754 |
acgcgggtaaagtggaccctctcaagaacaagctactgctatcgaagttgcaatgctgtgcatcctctttgtaatgacagttt--aggacagcttgcact |
24107851 |
T |
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| Q |
211 |
ta-tttttggataccatggcagaggagcggattttt |
245 |
Q |
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| T |
24107852 |
tattttttggatgacatggcagagggtcggattttt |
24107887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 24114471 - 24114544
Alignment:
| Q |
172 |
atcctctttgtaatgacagtttgaagaacagcttgcacttatttttggataccatggcagaggagcggattttt |
245 |
Q |
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| T |
24114471 |
atcctctttgtaatgacagtttggaggacatcttgcgcatattttctgataccatggcagaggggcggattttt |
24114544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 24114366 - 24114407
Alignment:
| Q |
30 |
aatgtcagaataaataaacaaagagattgctaatttaattat |
71 |
Q |
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| T |
24114366 |
aatgtaagaataaataaacaaagagattgttaatttaattat |
24114407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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