View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1500_high_53 (Length: 247)
Name: NF1500_high_53
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_53 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 24615714 - 24615946
Alignment:
| Q |
15 |
agttataataagttgtgaatagaaataatgatatcctctctttggctgtgaaatttatctatcacatattttgaatccaacataaaatccaccagttcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615714 |
agttataataagttgtgaatagaaataatgatatcctctctttggctgtgaaatttatctatcacatattttgaatccaacataaaatccaccagttcaa |
24615813 |
T |
|
| Q |
115 |
aatcactttgttcaacaaaatcctcactatcatctctaatgcacactcctcttctgactaagttaaggtgaaaagaaaaagacgtgtcaatattacattt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
24615814 |
aatcactttgttcaacaaaatcctcactatcatctctaatgcacactcctcttctgactaagttgaggtgaaaagaaaaagacgtgtgaatattacattt |
24615913 |
T |
|
| Q |
215 |
gaaactccctaaagatgattttttccacataac |
247 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
24615914 |
gaaactccctaaagatgactttttccacataac |
24615946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 247
Target Start/End: Complemental strand, 24115032 - 24114821
Alignment:
| Q |
44 |
gatatcctctctttggctgtgaaatttatctatcacatattttgaatccaacataaaatccaccagttcaaaatcactt-tgttc-------aacaaaat |
135 |
Q |
| |
|
||||||||| |||| ||| |||||||||||| ||||||||||||||||||| |||||| ||||| | |||||||||| |||| |||||||| |
|
|
| T |
24115032 |
gatatcctccttttgactgagaaatttatctaccacatattttgaatccaactaaaaatcgaccagcttaaaatcacttatgtttttgcaagaacaaaat |
24114933 |
T |
|
| Q |
136 |
cctcactatcatctctaatgcacactcctcttctgactaagttaaggtgaaaagaaaaagacgtgtcaatattacatttgaaactccctaaagatgattt |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||| ||||| |||||| |||||||||| | || ||| |||||||||||||||||||| |||||||| |
|
|
| T |
24114932 |
cctcactatcatctctaatgcacattcctatatcgacgaagttgaggtgagaagaaaaagatgcgtgaatgttacatttgaaactccctaacgatgattt |
24114833 |
T |
|
| Q |
236 |
tttccacataac |
247 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24114832 |
tttccacataac |
24114821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 24108236 - 24108136
Alignment:
| Q |
137 |
ctcactatcatctctaatgcacactcctctt-ctgactaagttaaggtgaaaagaaaaagacgtgtcaatattacatttgaaactccctaaagatgattt |
235 |
Q |
| |
|
||||||||||||||||||||||| ||| || | ||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24108236 |
ctcactatcatctctaatgcacattccaatttccgactaagttgaggtgagaagaaagagacgcgtcaatattacatttgaaactccctaacgatgattt |
24108137 |
T |
|
| Q |
236 |
t |
236 |
Q |
| |
|
| |
|
|
| T |
24108136 |
t |
24108136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 24115565 - 24115454
Alignment:
| Q |
132 |
aaatcctcactatcatctctaatgcacactcctcttctgactaagttaaggtgaaaagaaaaagacgtgtcaatattacatttgaaactccctaaagatg |
231 |
Q |
| |
|
||||||| |||| ||||| |||||||| |||| ||| ||||||||| |||||| |||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
24115565 |
aaatcctatctattatctccaatgcacattcctattccgactaagttgaggtgagaagaaaaagatacgtcaatgttacatttgaaactccctaacgatg |
24115466 |
T |
|
| Q |
232 |
attttttccaca |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24115465 |
attttttccaca |
24115454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University