View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1500_high_55 (Length: 245)
Name: NF1500_high_55
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 20949357 - 20949132
Alignment:
| Q |
1 |
attcaactagcacttattaaatagaagaaaaacaatgagataatcgtataaatggttgagatattaatataacttcactcacaaattaaaaatgaattta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20949357 |
attcaactagcacttattaaatagaagaaaaacaatgagataatcttataaatggttgagatattaatataacttcactcacaaattaaaaatgaattta |
20949258 |
T |
|
| Q |
101 |
tccgccttaaaaatttcataagttcccttcattaaattctccatgaatatnnnnnnnntgtattgggcatttttgttagattgaagtttggaaaaactac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
20949257 |
tccgccttaaaaatttcataagttcccttcattaaattctccatgaatataaaaaaaatgtattgggcttttttgttagtttgaagtttggaaaaactac |
20949158 |
T |
|
| Q |
201 |
tgtacaacttatctcagttgagaagt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
20949157 |
tgtacaacttatctcagttgagaagt |
20949132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 20978498 - 20978296
Alignment:
| Q |
2 |
ttcaactagcacttattaaata-gaagaaaaacaatgagataatcgtataaatggttgagatattaatataacttcactcacaaattaaaaatgaattta |
100 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20978498 |
ttcaactagcacttactaaaaaagaagaaaaacaatgagataatcttataaatggttgaaatattaatataacttcactcacaaatt-aaaatgaattta |
20978400 |
T |
|
| Q |
101 |
tccgccttaaaaatttcataagttcccttcattaaattctccatgaatatnnnnnnnntgtattgggcatttttgttagattgaagtttggaaaaactac |
200 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20978399 |
ttcgccttaaatatttcataagttcccttcattaaattctccgtaaatataaaaaaaatgtattgggcatttttgttagattgaagtttggaaaaactat |
20978300 |
T |
|
| Q |
201 |
tgta |
204 |
Q |
| |
|
|||| |
|
|
| T |
20978299 |
tgta |
20978296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 20993020 - 20993119
Alignment:
| Q |
34 |
aatgagataatcgtataaatggttgagatattaatataacttcactcacaaattaaaaatgaatttatccgccttaaaaatttcataagttcccttcatt |
133 |
Q |
| |
|
||||||||||||||| |||| |||| || || |||||||||||| | ||||||||| ||||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
20993020 |
aatgagataatcgtactaatgattgaaatttttatataacttcaccaaaaaattaaaa-tgaatatatgtgccttaaatatttcataagttcccttcatt |
20993118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University