View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_6 (Length: 515)
Name: NF1500_high_6
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 36998562 - 36998286
Alignment:
| Q |
19 |
gaatacaatgatagctaactgcttcattacacacaaaataaggtttagtttatgtggtcgtatgtttgttttcctcttaagtcattgtctgtcttaagag |
118 |
Q |
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| T |
36998562 |
gaatacaatgatagctaactgcttcattacacacaaaataaggtttagtttatgtggttgtatgtttgttttcctcttaagtcattgtctgtcttaagag |
36998463 |
T |
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| Q |
119 |
gtttaatttatgtttgtttcatttccttttcttttttggtctgagcttgtggatgttccaatttatttatgtacgtgggacattctgtgacatgctcaca |
218 |
Q |
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| T |
36998462 |
gtttaatttatgtttgtttcatttccttttcttttttggtctgagcttgtggatgttccaatttatttatgtacgtgggacattctgtgacatgctcaca |
36998363 |
T |
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| Q |
219 |
tggagttgtaatttcactttgcttgaataaataaaaaattaggagagtttaataattatacataaattatactcgct |
295 |
Q |
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| T |
36998362 |
tggagttgtaatttcactttgcttgaataaataaaaaattaggagagtttaataattatacataaattatactcgct |
36998286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 299 - 504
Target Start/End: Complemental strand, 36998251 - 36998050
Alignment:
| Q |
299 |
ttttctatttttaattaaatagaacaatgnnnnnnnnaaggaattaaatagaactaatggtttcgacatagccttcttccaaagaaacattcaaaactga |
398 |
Q |
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| T |
36998251 |
ttttgtatttttaattaaatagaacaatgttttttt-aaggaattaaatagaactaatggtttcgacatagccttcttccaaagaaacgttaaaaactga |
36998153 |
T |
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| Q |
399 |
tgaggtttgccttagcagcttttcacattaagtccttcaaagccttacctgaaaacagccatatattaatgttagattttacaaccttataatgctcaca |
498 |
Q |
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| T |
36998152 |
tgaggtttgccttagcagctttccacattaaatccttcaaagccttacctgaaaacagccatatat---tgttagattttacaaccttattatgctcaca |
36998056 |
T |
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| Q |
499 |
ggttct |
504 |
Q |
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| T |
36998055 |
gtttct |
36998050 |
T |
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