View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_61 (Length: 234)
Name: NF1500_high_61
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52113191 - 52112971
Alignment:
| Q |
1 |
ctcttcaccggaactttcatgccgtcaacagaactcactggtggttaccgtatcctctcttaccttgatccaaccgaaccaaaacacgaccaactcaaac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52113191 |
ctcttcaccggaactttcatgccgtcaacagaactcactggtggttaccgtatcctctcttaccttgatccaaccgaaccaaaacacgaccaactcaaac |
52113092 |
T |
|
| Q |
101 |
gccttcttttcttcctcctcaagtcacgtagtagccactttatccctgagttccactcatcttacacaaacctctttaacactctagaaaaagagcttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52113091 |
gccttcttttcttcctcctcaagtcacgtagtagccactttatccctgagtttcactcatcttacacaaacctctttaacactctagaaaaagagcttgc |
52112992 |
T |
|
| Q |
201 |
aaaaacaggatatgcaatttt |
221 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
52112991 |
aaaaacaggaaatgcaatttt |
52112971 |
T |
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