View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_69 (Length: 225)
Name: NF1500_high_69
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_69 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 935689 - 935913
Alignment:
| Q |
1 |
tcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtggtaattatatatatacttgttagacttttggttcaagcaagggttgc |
100 |
Q |
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| T |
935689 |
tcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtggtaattatatatatacttgttagacttttggttcaagcaagggtttc |
935788 |
T |
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| Q |
101 |
cgttattcattactcatcgatcacagtttcattgagttcgttttctttcttccataatttgctctaggtattttcattcttttattttggagggttttag |
200 |
Q |
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| T |
935789 |
cgttattcattactcatcgatcacagtttcattgagttcgttttctttcttccataatttgctctaggtattttcattcttttattttggagggttttag |
935888 |
T |
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| Q |
201 |
ttgattggctaacaaaaataaccaa |
225 |
Q |
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| T |
935889 |
ttgattggctaacaaaaataaccaa |
935913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 937464 - 937513
Alignment:
| Q |
1 |
tcatagaatcatctacattactcatatttacattcttaatcatgaaatca |
50 |
Q |
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| T |
937464 |
tcatagaatcatctactttgcttatatttacattcttaatcatgaaatca |
937513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7584306 - 7584254
Alignment:
| Q |
1 |
tcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtg |
53 |
Q |
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||||| |||||||||| ||||| ||||||| |||||||| ||||||||||||| |
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| T |
7584306 |
tcatataatcatctactttactaatatttatattcttaaccatgaaatcagtg |
7584254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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