View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_71 (Length: 214)
Name: NF1500_high_71
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 2911793 - 2911975
Alignment:
| Q |
17 |
accaactctaacaatatttctcaatgactataaactttccctcccattctcttttatttcatattccctctaggtgtcttatcattgtgtgtttgaatta |
116 |
Q |
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| T |
2911793 |
accaactctgacaatatttttcaatgactataaactttccctcccattctcctttatttcatattccctctaggtgtcttatcattgtgtgtttgaatta |
2911892 |
T |
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| Q |
117 |
gttataagttgtgccttgtgagttgtgagaataaggacttcaagcacttacattatattaggaaaatgagttctaagcctatg |
199 |
Q |
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| T |
2911893 |
gttctaagttgtgccttgtgggttgtgaggataaggacttcaagcacttacattatattaggaaaatgagttctaagcctatg |
2911975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 2907659 - 2907706
Alignment:
| Q |
148 |
taaggacttcaagcacttacattatattaggaaaatgagttctaagcc |
195 |
Q |
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| T |
2907659 |
taaggacttcaagcacttttattatattaggaaaacgagttctaagcc |
2907706 |
T |
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