View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_high_73 (Length: 204)

Name: NF1500_high_73
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_high_73
NF1500_high_73
[»] chr7 (2 HSPs)
chr7 (14-113)||(6449130-6449229)
chr7 (102-142)||(6449086-6449126)
[»] scaffold0368 (1 HSPs)
scaffold0368 (153-185)||(8486-8518)
[»] chr6 (1 HSPs)
chr6 (153-185)||(25024242-25024274)
[»] chr4 (2 HSPs)
chr4 (153-185)||(5375294-5375326)
chr4 (153-185)||(6807615-6807647)
[»] chr3 (1 HSPs)
chr3 (153-185)||(7181619-7181651)
[»] chr1 (1 HSPs)
chr1 (153-185)||(42872070-42872102)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 6449229 - 6449130
Alignment:
Q  14 attattctcttcatcgaagttgaagcaacaaatgttagtcaaacttgtcataacgacgacaacttctcatggatgaaagaggtcatgattaacaatcttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6449229 attattctcttcatcgaagttgaagcaacaaatgttagtcaaacttgtcataacgacgacaacttctcatggatgaaagaggtcatgattaacgatcttt 6449130  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 6449126 - 6449086
Alignment:
Q  102 ttaacaatctttttctatacttctcattgtcgtgtaagaat 142  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6449126 ttaacaatctttttctatacttctcattgtcgtgtaagaat 6449086  T

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Target: scaffold0368 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 8518 - 8486
Alignment:
Q  153 tactgctccctccgtccctatatataagaccct 185  Q
    |||| ||||||||||||||||||||||||||||    
T  8518 tactactccctccgtccctatatataagaccct 8486  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 25024242 - 25024274
Alignment:
Q  153 tactgctccctccgtccctatatataagaccct 185  Q
    |||| ||||||||||||||||||||||||||||    
T  25024242 tactactccctccgtccctatatataagaccct 25024274  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 5375294 - 5375326
Alignment:
Q  153 tactgctccctccgtccctatatataagaccct 185  Q
    |||| ||||||||||||||||||||||||||||    
T  5375294 tactactccctccgtccctatatataagaccct 5375326  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 6807647 - 6807615
Alignment:
Q  153 tactgctccctccgtccctatatataagaccct 185  Q
    |||| ||||||||||||||||||||||||||||    
T  6807647 tactactccctccgtccctatatataagaccct 6807615  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 7181651 - 7181619
Alignment:
Q  153 tactgctccctccgtccctatatataagaccct 185  Q
    |||| ||||||||||||||||||||||||||||    
T  7181651 tactactccctccgtccctatatataagaccct 7181619  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 42872070 - 42872102
Alignment:
Q  153 tactgctccctccgtccctatatataagaccct 185  Q
    |||| ||||||||||||||||||||||||||||    
T  42872070 tactactccctccgtccctatatataagaccct 42872102  T

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