View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_high_8 (Length: 505)
Name: NF1500_high_8
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 149 - 496
Target Start/End: Original strand, 13202109 - 13202463
Alignment:
| Q |
149 |
ctactctacta--ccaacaaaacaagtttaagcaa--gaggagaaaagcatcataaatgataactaaaaaa-ttcaaaaggaaactcttacaagtccatc |
243 |
Q |
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| T |
13202109 |
ctactctactaaaccaacaaaacaagtttaagcaatagaggagaaaagcatcataaatgataactaaaaaaattcaaaaggaaattcttacaagtccatc |
13202208 |
T |
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| Q |
244 |
ttaaatatgtataaggaacttttacaattcaaaagnnnnnnn--gatttagtaaaagcaaatatcaatagacagagtatccatttagaaaatccctttga |
341 |
Q |
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| T |
13202209 |
ttaaatatgtataaggaacttttacaattaaaaaaaaaaaaaaagatttagtaaaagcaaatatccatagacagagtacccatttagaaaatccctttga |
13202308 |
T |
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| Q |
342 |
gaagattcgcaacagtggagattgcagctccagtgatagcacattgaacaacatgttcatgtgtggagtcttccaatgtaagtgcaagggtagccccggt |
441 |
Q |
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| T |
13202309 |
gaagatttgcaacagttgagattgcagctccagtgatagcacattgaacaacatgttcatgtgtggagtcttccaatgtaagtgcaagggtagccccggt |
13202408 |
T |
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| Q |
442 |
gattgctccagcaactgcactgtttttctgcatcaaacagaacaagtgatgatgt |
496 |
Q |
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| T |
13202409 |
gattgctccagcaactgcactgtttttctgcatcaaacagaacaagtgatgatgt |
13202463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 13201979 - 13202026
Alignment:
| Q |
18 |
ttctaaagaaccattgtttttcttctgaagagcctaactgcagaattt |
65 |
Q |
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| T |
13201979 |
ttctaaagaaccattgtttttcttctgaagagcctaactgcagaattt |
13202026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 50326253 - 50326220
Alignment:
| Q |
440 |
gtgattgctccagcaactgcactgtttttctgca |
473 |
Q |
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| T |
50326253 |
gtgattgctccagcaactgcactatttttctgca |
50326220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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