View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_1 (Length: 738)

Name: NF1500_low_1
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_1
NF1500_low_1
[»] chr7 (11 HSPs)
chr7 (10-322)||(30087872-30088186)
chr7 (475-717)||(6081171-6081413)
chr7 (475-717)||(6082378-6082620)
chr7 (322-473)||(13077530-13077681)
chr7 (10-214)||(30091943-30092144)
chr7 (323-473)||(13078591-13078741)
chr7 (10-229)||(30098722-30098938)
chr7 (475-587)||(17901159-17901273)
chr7 (481-588)||(27021363-27021468)
chr7 (277-322)||(30091852-30091898)
chr7 (526-587)||(30640722-30640782)
[»] chr6 (9 HSPs)
chr6 (475-717)||(21535678-21535920)
chr6 (475-717)||(18132989-18133231)
chr6 (475-717)||(18131783-18132025)
chr6 (475-675)||(21395592-21395792)
chr6 (476-580)||(7033339-7033443)
chr6 (603-717)||(7033443-7033557)
chr6 (328-454)||(28889748-28889874)
chr6 (475-587)||(4303040-4303152)
chr6 (475-581)||(16189671-16189779)
[»] chr5 (12 HSPs)
chr5 (475-717)||(22950233-22950475)
chr5 (475-717)||(19934526-19934768)
chr5 (475-702)||(29526039-29526267)
chr5 (475-702)||(29527252-29527480)
chr5 (475-714)||(39701589-39701832)
chr5 (475-714)||(39702819-39703062)
chr5 (475-694)||(41050926-41051152)
chr5 (475-584)||(19139374-19139483)
chr5 (346-451)||(5033188-5033290)
chr5 (475-587)||(35144500-35144613)
chr5 (621-676)||(33215264-33215321)
chr5 (558-587)||(37473631-37473660)
[»] chr3 (13 HSPs)
chr3 (475-717)||(54994579-54994821)
chr3 (475-707)||(7197692-7197928)
chr3 (475-653)||(45826153-45826331)
chr3 (475-717)||(2386293-2386543)
chr3 (477-651)||(592537-592711)
chr3 (475-651)||(48637539-48637715)
chr3 (322-473)||(39984803-39984954)
chr3 (322-473)||(39983742-39983893)
chr3 (323-472)||(41968188-41968336)
chr3 (475-694)||(40976771-40977001)
chr3 (502-637)||(51274436-51274571)
chr3 (327-433)||(14414236-14414340)
chr3 (621-676)||(25184672-25184729)
[»] chr1 (20 HSPs)
chr1 (475-717)||(8089720-8089962)
chr1 (475-717)||(10582670-10582912)
chr1 (475-717)||(10583876-10584118)
chr1 (475-692)||(49122123-49122340)
chr1 (475-717)||(49123232-49123474)
chr1 (502-717)||(49121909-49122124)
chr1 (475-651)||(8788534-8788710)
chr1 (322-473)||(8090040-8090191)
chr1 (323-473)||(27962617-27962767)
chr1 (323-473)||(48907301-48907451)
chr1 (343-472)||(172880-173009)
chr1 (503-676)||(23540999-23541176)
chr1 (476-590)||(23540880-23540998)
chr1 (475-587)||(3815222-3815335)
chr1 (515-579)||(19950378-19950442)
chr1 (475-587)||(36346541-36346653)
chr1 (537-586)||(17826222-17826271)
chr1 (524-586)||(30038108-30038170)
chr1 (545-587)||(40670604-40670646)
chr1 (70-123)||(35171660-35171713)
[»] scaffold0011 (2 HSPs)
scaffold0011 (475-717)||(205590-205832)
scaffold0011 (475-651)||(211667-211843)
[»] chr4 (10 HSPs)
chr4 (475-717)||(11962000-11962242)
chr4 (322-472)||(54938828-54938978)
chr4 (323-443)||(54937788-54937908)
chr4 (475-645)||(3567008-3567178)
chr4 (559-644)||(45638746-45638831)
chr4 (527-590)||(27869371-27869434)
chr4 (490-532)||(45638710-45638752)
chr4 (524-586)||(32992387-32992448)
chr4 (524-574)||(36982313-36982362)
chr4 (621-676)||(25542486-25542543)
[»] chr2 (13 HSPs)
chr2 (475-717)||(33789849-33790094)
chr2 (322-473)||(14684556-14684707)
chr2 (322-473)||(21306412-21306563)
chr2 (323-473)||(14685617-14685767)
chr2 (323-473)||(30246458-30246608)
chr2 (322-473)||(40421380-40421531)
chr2 (323-473)||(4517243-4517393)
chr2 (323-473)||(21307469-21307619)
chr2 (323-473)||(40422439-40422589)
chr2 (475-681)||(12324855-12325068)
chr2 (549-676)||(18955376-18955505)
chr2 (526-586)||(13218743-13218802)
chr2 (558-602)||(3302449-3302494)
[»] scaffold0227 (2 HSPs)
scaffold0227 (475-717)||(12195-12436)
scaffold0227 (475-694)||(11065-11288)
[»] scaffold0018 (1 HSPs)
scaffold0018 (500-717)||(177889-178106)
[»] scaffold0026 (2 HSPs)
scaffold0026 (475-651)||(80753-80929)
scaffold0026 (480-651)||(79557-79728)
[»] chr8 (11 HSPs)
chr8 (323-473)||(45036163-45036313)
chr8 (475-681)||(40254410-40254615)
chr8 (323-473)||(6540576-6540728)
chr8 (323-473)||(13255565-13255714)
chr8 (478-586)||(21661182-21661290)
chr8 (475-677)||(2411062-2411264)
chr8 (475-549)||(26246969-26247043)
chr8 (524-586)||(5176597-5176658)
chr8 (524-582)||(26187541-26187599)
chr8 (502-602)||(13260936-13261037)
chr8 (621-676)||(36241268-36241325)
[»] scaffold0063 (1 HSPs)
scaffold0063 (555-586)||(33903-33934)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 30088186 - 30087872
Alignment:
Q  10 aagaaaattccaaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaata 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  30088186 aagaaaattccaaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccgtgtgcaacttcaaactgattggagcaagatctttcaata 30088087  T
Q  110 aaggtgtgattgcaggtaactatcgaaatgttggaatcagcaagaactcagctagtgacagtatcggacatggaactcatacatcatcaactgttgcagg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30088086 aaggtgtgattgcaggtaactatcgaaatgttggaatcagcaagaactcagctagagacagtatcggacatggaactcatacatcatcaactgttgcagg 30087987  T
Q  210 taac--tgttatttttattgttttttatatagacaaatagtaacaaattatgttagtttcttggttagtactctcagcttactatcgagttgtctgcttc 307  Q
    ||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30087986 taactgtgttatttttattgttttttacatagacaaatagtaacaaattatgttagtttcttggttagtactctcagcttactatcgagttgtttgcttc 30087887  T
Q  308 ggacttcaggtaact 322  Q
    |||||||||||||||    
T  30087886 ggacttcaggtaact 30087872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 6081413 - 6081171
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6081413 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 6081314  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  6081313 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 6081214  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  6081213 tttagtagacagcaattactacacacaagtaacagttacttat 6081171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 6082620 - 6082378
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6082620 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 6082521  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||||    
T  6082520 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataataataagtcctatagctgttacatagaag 6082421  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  6082420 tttagtagacagcaattactacacacaagtaacagttacttat 6082378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 322 - 473
Target Start/End: Complemental strand, 13077681 - 13077530
Alignment:
Q  322 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13077681 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 13077582  T
Q  422 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077581 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13077530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 30092144 - 30091943
Alignment:
Q  10 aagaaaattccaaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaata 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30092144 aagaaaattccgaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaaca 30092045  T
Q  110 aaggtgtgattgcaggtaactatcgaaatgttggaatcagcaagaactcagctagtgacagtatcggacatggaactcatacatcatcaactgttgcagg 209  Q
    |||||||||||||   |    ||| ||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  30092044 aaggtgtgattgc---ttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcagg 30091948  T
Q  210 taact 214  Q
    |||||    
T  30091947 taact 30091943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 13078741 - 13078591
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  13078741 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacggaataatattgcagaacttcgagggtctgcacctccctattgcca 13078642  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13078641 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13078591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 30098722 - 30098938
Alignment:
Q  10 aagaaaattccaaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| ||||| ||||||||| ||||||||||||||| |||||| |    
T  30098722 aagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca 30098821  T
Q  110 aaggtgtgattgcaggtaactatcgaaatgttggaatcagcaagaactcagctagtgacagtatcggacatggaactcatacatcatcaactgttgcagg 209  Q
    |||||||||||||   |    ||| |||||||  |||||||| |||||||||||| |||| ||| || ||||||||||| ||||||||||||||||||||    
T  30098822 aaggtgtgattgc---ttcaaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaactgttgcagg 30098918  T
Q  210 taactgttatttttattgtt 229  Q
    ||||| || ||||| |||||    
T  30098919 taactattttttttgttgtt 30098938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 17901273 - 17901159
Alignment:
Q  475 gataggaactgatatcaaaa--tataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgaga 572  Q
    ||||| ||||||||||||||  |||||| ||||||||| ||||||||| | ||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  17901273 gatagaaactgatatcaaaacatataaattaatagtaatattacaatagattcccaagaaattcgagagtcttggtactctcccctccaagaattcgaga 17901174  T
Q  573 gcttggtctctccct 587  Q
    |||||||||||||||    
T  17901173 gcttggtctctccct 17901159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 481 - 588
Target Start/End: Complemental strand, 27021468 - 27021363
Alignment:
Q  481 aactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtc 580  Q
    ||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||||  ||| | |||||| |||| || |||||||||||||||||| ||    
T  27021468 aactgatatcaaaatattacttaatagtaatattacaatagaatcccaagaaattc--gagtcctggttccctcctcttcaagaattcgagagcttgatc 27021371  T
Q  581 tctcccta 588  Q
    ||||||||    
T  27021370 tctcccta 27021363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 30091898 - 30091852
Alignment:
Q  277 actctcagcttacta-tcgagttgtctgcttcggacttcaggtaact 322  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  30091898 actctcagcttactaatcgagctgtctgcttcggacttcaggtaact 30091852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 587
Target Start/End: Complemental strand, 30640782 - 30640722
Alignment:
Q  526 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 587  Q
    ||||||||||  ||||||||||| |||| || ||||||||||| ||||||||||||||||||    
T  30640782 ccaagaaatttgagagccttggt-ctctgccttccaagaattcaagagcttggtctctccct 30640722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 21535920 - 21535678
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  21535920 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 21535821  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21535820 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagctgttacatagaag 21535721  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  21535720 tttagtagacagcaattactacatacaagtaacagttacttat 21535678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 475 - 717
Target Start/End: Original strand, 18132989 - 18133231
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  18132989 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 18133088  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  18133089 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaag 18133188  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  18133189 tttagtagacagcaattactacacacaagtaacagttacttat 18133231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 475 - 717
Target Start/End: Original strand, 18131783 - 18132025
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||    
T  18131783 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccttccaagtattcgagagc 18131882  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  18131883 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaag 18131982  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  18131983 tttagtagacagcaattactacacacaagtaacagttacttat 18132025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 475 - 675
Target Start/End: Original strand, 21395592 - 21395792
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  21395592 gatagaaactgatatcaaaatataaactaacagtaagattataatataatcccaagaaattcaagagtcttggttgtctcccctccaagaattcgagagc 21395691  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  21395692 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaaatcctatggctgttacatagaag 21395791  T
Q  675 t 675  Q
    |    
T  21395792 t 21395792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 476 - 580
Target Start/End: Original strand, 7033339 - 7033443
Alignment:
Q  476 ataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagct 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  7033339 ataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgaaagct 7033438  T
Q  576 tggtc 580  Q
    |||||    
T  7033439 tggtc 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 603 - 717
Target Start/End: Original strand, 7033443 - 7033557
Alignment:
Q  603 caatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaagtttagtaaacagcaattactacatacaa 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| ||||    
T  7033443 caatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaagtttagtagacaacaattactacacacaa 7033542  T
Q  703 gtaacggttacttat 717  Q
    ||||| |||||||||    
T  7033543 gtaacagttacttat 7033557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 28889748 - 28889874
Alignment:
Q  328 gaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatg 427  Q
    |||| ||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||| ||||||| ||||||||||    
T  28889748 gaaaccaactgatatagaagaatgaaatagggaaaatccatttgattacagaataatatcgcagaactttgagggtctgcaactccctaatgccaaaatg 28889847  T
Q  428 gccccttcccagtcaaatcctcagatg 454  Q
     ||||||||||||||||||||||||||    
T  28889848 accccttcccagtcaaatcctcagatg 28889874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 4303152 - 4303040
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||| ||||| |||||||||  ||| ||||| ||| | ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4303152 gatagaaactggtatcaaaatccaaattaatattaataatacaatagattcccaagaaattctagagtcttggttctctcccctccaagaattcgagagc 4303053  T
Q  575 ttggtctctccct 587  Q
    |||||||||||||    
T  4303052 ttggtctctccct 4303040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 581
Target Start/End: Complemental strand, 16189779 - 16189671
Alignment:
Q  475 gataggaactgatatcaaaa--tataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgaga 572  Q
    ||||| ||||||||||||||  |||||| ||||||||| ||||||||| ||||||| | || |  ||||  |||||||||||||||||||||||||||||    
T  16189779 gatagaaactgatatcaaaacatataaattaatagtaatattacaatagaatcccatggaaattgagagtgttggttctctcccctccaagaattcgaga 16189680  T
Q  573 gcttggtct 581  Q
    |||||||||    
T  16189679 gcttggtct 16189671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 22950475 - 22950233
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  22950475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 22950376  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  22950375 ttggtctctccctaccaatcctttatcccaatccctgaatacctttattttcctctgcatcttatttataatactaagtcctatagctgttacatagaag 22950276  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  22950275 tttagtagacagcaattactacacacaagtaacagttacttat 22950233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 19934768 - 19934526
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  19934768 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcaagagtcttggttctctcccctccaagtattcgagagc 19934669  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  19934668 ttggtctctccctaccaatcctttatcccaatccctaaatgcctttcttttcctctgcatcttatttataatactaagtcttatagttgttacatagaag 19934569  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| || |||||||||||| ||||||||| |||||||||    
T  19934568 tttagtagacggcaattactacacacaagtaacagttacttat 19934526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 475 - 702
Target Start/End: Original strand, 29526039 - 29526267
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  29526039 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaatccgagagtcttggttctctcccctccaagaattcgagagc 29526138  T
Q  575 ttggtctctccctacctatccttt-atcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaa 673  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  29526139 ttggtctctccctaccaatcctttaatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaa 29526238  T
Q  674 gtttagtaaacagcaattactacatacaa 702  Q
    |||||||| ||||||||||||||| ||||    
T  29526239 gtttagtagacagcaattactacacacaa 29526267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 475 - 702
Target Start/End: Original strand, 29527252 - 29527480
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccc-tccaagaattcgagag 573  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||    
T  29527252 gataggaacagatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctccccctccaagaattcaagag 29527351  T
Q  574 cttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaa 673  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||    
T  29527352 cttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttaaaatactaagtccaatagctgttacatagaa 29527451  T
Q  674 gtttagtaaacagcaattactacatacaa 702  Q
    |||||||| ||||||||||||||| ||||    
T  29527452 gtttagtagacagcaattactacacacaa 29527480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 475 - 714
Target Start/End: Original strand, 39701589 - 39701832
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  39701589 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 39701688  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttacata 670  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     ||||||||  ||||||||    
T  39701689 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaactctctcctatagcagttacata 39701788  T
Q  671 gaagtttagtaaacagcaattactacatacaagtaacggttact 714  Q
    ||||||||||| |||||||||||| || | ||||||| ||||||    
T  39701789 gaagtttagtagacagcaattactgcacataagtaacagttact 39701832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 475 - 714
Target Start/End: Original strand, 39702819 - 39703062
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  39702819 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 39702918  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttacata 670  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||     ||||||||  ||||||||    
T  39702919 ttggtctctccctaccgatcctttatcccaatccctgaatgcctttcttttcctttgcaacttatttataatacaaactctctcctatagcagttacata 39703018  T
Q  671 gaagtttagtaaacagcaattactacatacaagtaacggttact 714  Q
    ||||||||||| ||||||| |||| || | ||||||| ||||||    
T  39703019 gaagtttagtagacagcaaatactgcacataagtaacagttact 39703062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 475 - 694
Target Start/End: Original strand, 41050926 - 41051152
Alignment:
Q  475 gataggaactgatatcaaaat-ataaactaatagtaag-attacaatataatcccaagaaattct-agagccttggttctctcccctccaagaattcgag 571  Q
    ||||| ||||||||||||||| ||||| | |||||||  || |||||| |||||||||||||||  |||| ||||||||| |||||||||||||||| ||    
T  41050926 gatagaaactgatatcaaaattataaatttatagtaattatcacaatagaatcccaagaaattccgagagtcttggttctgtcccctccaagaattcaag 41051025  T
Q  572 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttac 667  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||     |||||||   |||||    
T  41051026 agcttggtctctccctacctatcctttatcccaatccctgaatatctgtcttttcctctgcatcttatttataatactaactctctcctatatcagttac 41051125  T
Q  668 atagaagtttagtaaacagcaattact 694  Q
    |||||||||||||| | ||||| ||||    
T  41051126 atagaagtttagtagatagcaactact 41051152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 19139483 - 19139374
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  19139483 gatagaaactgatatcaaaatttaaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattagagagc 19139384  T
Q  575 ttggtctctc 584  Q
    ||||| ||||    
T  19139383 ttggtttctc 19139374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 451
Target Start/End: Complemental strand, 5033290 - 5033188
Alignment:
Q  346 agaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtcaaat 445  Q
    ||||||||||||||||| ||||||||||||||||| || ||  |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  5033290 agaataaaatagggaaa-tccctttgattacagaa-aacatcacagaactttgaggctctgcacctccctat-gccaaaatggccccttcccagtcaaat 5033194  T
Q  446 cctcag 451  Q
    ||||||    
T  5033193 cctcag 5033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 587
Target Start/End: Original strand, 35144500 - 35144613
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaata-taatcccaagaaattctagagccttggttctctcccctccaagaattcgagag 573  Q
    ||||| |||||||||||||||  ||| ||||| ||| | ||||||| |  ||| ||||||||| |||| ||||||||||||||||||||||||||||||     
T  35144500 gatagaaactgatatcaaaattcaaattaatattaataatacaatagttttcctaagaaattcgagagtcttggttctctcccctccaagaattcgagac 35144599  T
Q  574 cttggtctctccct 587  Q
    ||||||||||||||    
T  35144600 cttggtctctccct 35144613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 676
Target Start/End: Original strand, 33215264 - 33215321
Alignment:
Q  621 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 676  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  33215264 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 33215321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 587
Target Start/End: Complemental strand, 37473660 - 37473631
Alignment:
Q  558 tccaagaattcgagagcttggtctctccct 587  Q
    ||||||||||||||||||||||||||||||    
T  37473660 tccaagaattcgagagcttggtctctccct 37473631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 54994821 - 54994579
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  54994821 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 54994722  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  54994721 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagcagttacatagaag 54994622  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| | ||||||| |||||||||    
T  54994621 tttagtagacagcaattactacacataagtaacagttacttat 54994579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 475 - 707
Target Start/End: Complemental strand, 7197928 - 7197692
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  7197928 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 7197829  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttacata 670  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     |||| |||  ||||||||    
T  7197828 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaactctctcctgtagcagttacata 7197729  T
Q  671 gaagtttagtaaacagcaattactacatacaagtaac 707  Q
    ||||||| ||| |||||||||||| || | |||||||    
T  7197728 gaagttttgtagacagcaattactgcacataagtaac 7197692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 475 - 653
Target Start/End: Original strand, 45826153 - 45826331
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  45826153 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagaattcgagagc 45826252  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaatt 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45826253 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaatt 45826331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 475 - 717
Target Start/End: Original strand, 2386293 - 2386543
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagat--------tacaatataatcccaagaaattctagagccttggttctctcccctccaagaat 566  Q
    ||||| |||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  2386293 gatagaaactgatatcaaaatataaactaatagtaatatactaatattacaatataatcccaagaaattcgagagtctcggttctctcccctccaagaat 2386392  T
Q  567 tcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgtta 666  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||   ||||    
T  2386393 tcgagagcttggtctctccctacctatcctttatctcaatccctgaatgcctttcttttcctctgcatcttatttataatactaagtcctataacagtta 2386492  T
Q  667 catagaagtttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    |||| |||||||||| |||||||||||| || ||||| ||| |||||||||    
T  2386493 cataaaagtttagtagacagcaattactgcagacaagcaacagttacttat 2386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 477 - 651
Target Start/End: Complemental strand, 592711 - 592537
Alignment:
Q  477 taggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagctt 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  592711 taggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagggtcttggttctctcccctccaagaattcgagagctt 592612  T
Q  577 ggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 651  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  592611 gggctctccctaccaatcctttatcccaatccctgaatacctttcttttcctttgcatcttatttataatactaa 592537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 475 - 651
Target Start/End: Original strand, 48637539 - 48637715
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||    
T  48637539 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagc 48637638  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 651  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  48637639 ttggtctctccctaccaatcctttatcccaatccctcaatacctctcttttcctctgcatcttatttataatactaa 48637715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 322 - 473
Target Start/End: Original strand, 39984803 - 39984954
Alignment:
Q  322 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39984803 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 39984902  T
Q  422 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984903 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 39984954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 322 - 473
Target Start/End: Original strand, 39983742 - 39983893
Alignment:
Q  322 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39983742 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 39983841  T
Q  422 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39983842 taaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 39983893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 323 - 472
Target Start/End: Original strand, 41968188 - 41968336
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  41968188 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagat-aatattgcagaacttcgagggtctgcacctccctattgcca 41968286  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968287 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 41968336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 475 - 694
Target Start/End: Complemental strand, 40977001 - 40976771
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  40977001 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaaaaaattcgagagtcttggttctctcccctccaagaattcgagagc 40976902  T
Q  575 ttggtctc-------tccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaat----tcctatagttg 663  Q
    ||||||||       ||| ||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||    ||||||||  |    
T  40976901 ttggtctctccatagtccataccagtcctttatcccaatccctgcatgcctttcttttcctctgcatcttatttataagactaattccctcctatagcag 40976802  T
Q  664 ttacatagaagtttagtaaacagcaattact 694  Q
    |||||| |||||||||||  |||||| ||||    
T  40976801 ttacattgaagtttagtagccagcaactact 40976771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 502 - 637
Target Start/End: Complemental strand, 51274571 - 51274436
Alignment:
Q  502 taatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatcctttatc 601  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  51274571 taatagtaatattacaatataatcccaagaaattcgagagtcttggttctcccccctccaagaatttgagagcttggtctctccctacctatcctttatc 51274472  T
Q  602 ccaatccctgaatacctttcttttcctctgcatctt 637  Q
    ||||||||||||| || |||||||||||||||||||    
T  51274471 ccaatccctgaatgcccttcttttcctctgcatctt 51274436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 327 - 433
Target Start/End: Complemental strand, 14414340 - 14414236
Alignment:
Q  327 agaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaat 426  Q
    ||||| ||||||||| |||||||  |||||||| |||||  |||| ||||||||  |||| |||||||||| ||||||||||| |||||| | |||||||    
T  14414340 agaaaccaactgatatagaagaaggaaataggggaaatc--tttgtttacagaatgatatggcagaacttctagggtctgcacgtccctaatcccaaaat 14414243  T
Q  427 ggcccct 433  Q
    |||||||    
T  14414242 ggcccct 14414236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 676
Target Start/End: Complemental strand, 25184729 - 25184672
Alignment:
Q  621 cttttcctctgcatc-ttatttataatactaa-ttcctatagttgttacatagaagtt 676  Q
    ||||||||||||||| |||||||||||||||| | |||||||  ||||||||||||||    
T  25184729 cttttcctctgcatctttatttataatactaactccctatagcagttacatagaagtt 25184672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 475 - 717
Target Start/End: Original strand, 8089720 - 8089962
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  8089720 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 8089819  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  8089820 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 8089919  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  8089920 tttagtagacagcaattactacacacaagtaacagttacttat 8089962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 10582912 - 10582670
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  10582912 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 10582813  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  10582812 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 10582713  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  10582712 tttagtagacagcaattactacacacaagtaacagttacttat 10582670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 10584118 - 10583876
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  10584118 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 10584019  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||    
T  10584018 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcccatagctgttacatagaag 10583919  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  10583918 tttagtagacagcaattactacacacaagtaacagttacttat 10583876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 475 - 692
Target Start/End: Complemental strand, 49122340 - 49122123
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  49122340 gataggaactgatatgaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 49122241  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  49122240 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaag 49122141  T
Q  675 tttagtaaacagcaatta 692  Q
    ||||| | ||| ||||||    
T  49122140 tttagcagacaacaatta 49122123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 49123474 - 49123232
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||    
T  49123474 gataggaactgatatcaaaatataaactaatagtaagattagaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagtgc 49123375  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
        |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  49123374 ccaatctctccctaccaatcctttaccccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 49123275  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  49123274 tttagtagacagcaattactacacacaagtaacagttacttat 49123232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 502 - 717
Target Start/End: Complemental strand, 49122124 - 49121909
Alignment:
Q  502 taatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatcctttatc 601  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  49122124 taatagtaagattacaatataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagcttgatctctccctaccaatcctttatc 49122025  T
Q  602 ccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaagtttagtaaacagcaattactacataca 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||| || |||    
T  49122024 ccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaagtttagtagacaacaattacttcacaca 49121925  T
Q  702 agtaacggttacttat 717  Q
    |||||| |||||||||    
T  49121924 agtaacagttacttat 49121909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 475 - 651
Target Start/End: Original strand, 8788534 - 8788710
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||    
T  8788534 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagaattcgaaagc 8788633  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8788634 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 8788710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 322 - 473
Target Start/End: Original strand, 8090040 - 8090191
Alignment:
Q  322 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8090040 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 8090139  T
Q  422 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8090140 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 8090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 27962617 - 27962767
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  27962617 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca 27962716  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27962717 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 27962767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 48907301 - 48907451
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  48907301 tgatagaaatcaattgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattacca 48907400  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48907401 aaatggccccttcccagtcaaatccttagatgcccctcaatcttcccatcc 48907451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 343 - 472
Target Start/End: Original strand, 172880 - 173009
Alignment:
Q  343 agaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtca 442  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172880 agaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtca 172979  T
Q  443 aatcctcagatgcccctcaatcttcccatc 472  Q
    ||||||||||||||||||||||||||||||    
T  172980 aatcctcagatgcccctcaatcttcccatc 173009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 503 - 676
Target Start/End: Original strand, 23540999 - 23541176
Alignment:
Q  503 aatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaatt--cgagagcttggtctctccctacctatcctttat 600  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || |||||| |||  | ||||||||||||||||||||| |||| ||||    
T  23540999 aatagtaagattacagtataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaagagcttggtctctccctaccaatccattat 23541098  T
Q  601 cccaatccctgaatacctttcttttcctctgcatc-ttatttataatactaa-ttcctatagttgttacatagaagtt 676  Q
    ||||||||||||||  | |||||||||| |||||| ||||| |||||||||| | |||||||  ||||||||||||||    
T  23541099 cccaatccctgaatgtccttcttttcctttgcatctttattcataatactaactccctatagcagttacatagaagtt 23541176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 476 - 590
Target Start/End: Original strand, 23540880 - 23540998
Alignment:
Q  476 ataggaactgatatcaaaatat--aaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaa--ttcgag 571  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || |||||| |  ||| ||    
T  23540880 ataggaactgatatcaaaatatataaactaatagtaagattacagtataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaag 23540979  T
Q  572 agcttggtctctccctacc 590  Q
    |||||||||||||||||||    
T  23540980 agcttggtctctccctacc 23540998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 3815335 - 3815222
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataat-cccaagaaattctagagccttggttctctcccctccaagaattcgagag 573  Q
    ||||| |||||||||||||||| ||| ||||| ||| | ||||||| | | |||| ||||||| |||| ||||||||||||||||||||||||||||| |    
T  3815335 gatagaaactgatatcaaaatacaaattaatattaataatacaatagatttcccatgaaattcgagagtcttggttctctcccctccaagaattcgagtg 3815236  T
Q  574 cttggtctctccct 587  Q
    ||||||||||||||    
T  3815235 cttggtctctccct 3815222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 579
Target Start/End: Original strand, 19950378 - 19950442
Alignment:
Q  515 acaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggt 579  Q
    |||||| | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  19950378 acaataaattcccaagaaatttgagagccttggttctctcccctccaagaattcgagagcttggt 19950442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 587
Target Start/End: Original strand, 36346541 - 36346653
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||| |||||||| ||||||| ||| ||||| ||| | |||| ||    |||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  36346541 gatagaaactgataccaaaatacaaattaatattaataatacagtagttccccaagaaattcgagagtcttggttctctcccctccatgaattcgagagc 36346640  T
Q  575 ttggtctctccct 587  Q
    ||| |||||||||    
T  36346641 ttgatctctccct 36346653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 17826222 - 17826271
Alignment:
Q  537 tagagccttggttctctcccctccaagaattcgagagcttggtctctccc 586  Q
    ||||| ||||| ||||  ||||||||||||||||||||||||||||||||    
T  17826222 tagagtcttgggtctcctccctccaagaattcgagagcttggtctctccc 17826271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 586
Target Start/End: Original strand, 30038108 - 30038170
Alignment:
Q  524 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 586  Q
    ||||||||||||| |||| | | | |||||||| ||||||||||| |||| ||||||||||||    
T  30038108 tcccaagaaattcaagagtcgtcggtctctcccttccaagaattcaagagtttggtctctccc 30038170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 587
Target Start/End: Original strand, 40670604 - 40670646
Alignment:
Q  545 tggttctctcccctccaagaattcgagagcttggtctctccct 587  Q
    |||||||||||| |||||||||| |||||||||| ||||||||    
T  40670604 tggttctctcccgtccaagaatttgagagcttggcctctccct 40670646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 35171713 - 35171660
Alignment:
Q  70 atgtgcaacttcaaactgattggagctagatctttcaataaaggtgtgattgca 123  Q
    ||||| ||||| ||| | ||||||||||||| |||||| |||||||||||||||    
T  35171713 atgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgca 35171660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 475 - 717
Target Start/End: Original strand, 205590 - 205832
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  205590 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 205689  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  205690 ttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaag 205789  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  205790 tttagtagacagcaattactacacacaagtaacagttacttat 205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 475 - 651
Target Start/End: Original strand, 211667 - 211843
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  211667 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 211766  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 651  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  211767 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaa 211843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 11962242 - 11962000
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||    
T  11962242 gataggaactgatatcaaaatataaactaatagttagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtgttcgagagc 11962143  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    ||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||     
T  11962142 ttggtctatccctaccaatcctttaccccaatgcctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaaa 11962043  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  11962042 tttagtagacagcaattactacacacaagtaacagttacttat 11962000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 322 - 472
Target Start/End: Original strand, 54938828 - 54938978
Alignment:
Q  322 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 421  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  54938828 ttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcc 54938927  T
Q  422 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54938928 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 54938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 323 - 443
Target Start/End: Original strand, 54937788 - 54937908
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |    
T  54937788 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcta 54937887  T
Q  423 aaatggccccttcccagtcaa 443  Q
    |||||||||||||||||||||    
T  54937888 aaatggccccttcccagtcaa 54937908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 475 - 645
Target Start/End: Complemental strand, 3567178 - 3567008
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||||| |||| |||||||||| |  | |||||||||||||||||||||||||||| ||     
T  3567178 gatagaaactgagatcaaaatataacctaatagtaatattacaatacaatctcaagaaattcaattgtcttggttctctcccctccaagaattcgatagt 3567079  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaat-acctttcttttcctctgcatc-ttatttataa 645  Q
    |||||||||||||||||||||||||| |||||||  ||||  || ||||||||||||||||| ||||||||||    
T  3567078 ttggtctctccctacctatcctttattccaatcc--gaatgccccttcttttcctctgcatctttatttataa 3567008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 559 - 644
Target Start/End: Original strand, 45638746 - 45638831
Alignment:
Q  559 ccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttata 644  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45638746 ccaagaattcgagagcttggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 45638831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 527 - 590
Target Start/End: Complemental strand, 27869434 - 27869371
Alignment:
Q  527 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacc 590  Q
    |||||||||| |||| ||||  |||||||| ||||||||||| |||||||||||||||||||||    
T  27869434 caagaaattcgagagtcttgcatctctcccttccaagaattcaagagcttggtctctccctacc 27869371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 45638710 - 45638752
Alignment:
Q  490 caaaatataaactaatagtaagattacaatataatcccaagaa 532  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  45638710 caaagtataaactaatagtaatattacaatataatcccaagaa 45638752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 586
Target Start/End: Complemental strand, 32992448 - 32992387
Alignment:
Q  524 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 586  Q
    ||||||| ||||| |||| ||||| |||||||| |||||||| |||||||||| |||||||||    
T  32992448 tcccaaggaattcgagagtcttgggtctctccc-tccaagaactcgagagctttgtctctccc 32992387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 574
Target Start/End: Original strand, 36982313 - 36982362
Alignment:
Q  524 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  36982313 tcccaaggaattctagagtcttggatctctccc-tccaagaattcgagagc 36982362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 676
Target Start/End: Original strand, 25542486 - 25542543
Alignment:
Q  621 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 676  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  25542486 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 25542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 3e-96; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 33790094 - 33789849
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattctagagccttggttctctcccctccaagaattcgag 571  Q
    ||||| |||||||||||||||||||| | |||||||  |||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||| |||    
T  33790094 gatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaagaaattcgagagtcttggttctctcccctccaagaatttgag 33789995  T
Q  572 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatag 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  33789994 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatag 33789895  T
Q  672 aagtttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  33789894 aagtttagtagacagcaattactacacacaagtaacagttacttat 33789849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 322 - 473
Target Start/End: Complemental strand, 14684707 - 14684556
Alignment:
Q  322 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14684707 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 14684608  T
Q  422 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14684607 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 14684556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 322 - 473
Target Start/End: Complemental strand, 21306563 - 21306412
Alignment:
Q  322 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21306563 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 21306464  T
Q  422 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21306463 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 21306412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 14685767 - 14685617
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14685767 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 14685668  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14685667 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 14685617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 30246608 - 30246458
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30246608 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 30246509  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30246508 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 30246458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 322 - 473
Target Start/End: Complemental strand, 40421531 - 40421380
Alignment:
Q  322 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  40421531 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagagtaatattgcagaacttcgagggtctgcacctccctattgcc 40421432  T
Q  422 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40421431 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 40421380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 4517243 - 4517393
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4517243 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacatcgagggtctgcacctccctattgcca 4517342  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4517343 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 4517393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 21307619 - 21307469
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21307619 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 21307520  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21307519 aaaaggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 21307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 40422589 - 40422439
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  40422589 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca 40422490  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40422489 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 40422439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 475 - 681
Target Start/End: Complemental strand, 12325068 - 12324855
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattctagagccttggttctctcccctccaagaattcgag 571  Q
    ||||| |||||||||||||||||||| | |||||||  |||||||||||  |||||||| ||||| |||| |||||||||||||||||||| ||||||||    
T  12325068 gatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaaggaattcgagagtcttggttctctcccctccaaaaattcgag 12324969  T
Q  572 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttac 667  Q
    || |||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||     ||||||||| |||||    
T  12324968 agtttggtctctccctaccaatcctttatcgcaatccctgaatagctttcttttcctttgcatcttatttataatactaactctctcctatagtagttac 12324869  T
Q  668 atagaagtttagta 681  Q
    | | ||||||||||    
T  12324868 acataagtttagta 12324855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 549 - 676
Target Start/End: Complemental strand, 18955505 - 18955376
Alignment:
Q  549 tctctcccctccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatc-ttatttataata 647  Q
    |||||||| |||||||||| ||||| |||||||||||||||| ||||||||||| |||  | |||| |  ||||||||||||||||| |||||||||| |    
T  18955505 tctctcccttccaagaattagagagattggtctctccctaccaatcctttatccaaataaccgaattctcttcttttcctctgcatctttatttataaca 18955406  T
Q  648 ctaa-ttcctatagttgttacatagaagtt 676  Q
    |||| | |||||||  |||||||| |||||    
T  18955405 ctaactccctatagcagttacataaaagtt 18955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 586
Target Start/End: Original strand, 13218743 - 13218802
Alignment:
Q  526 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 586  Q
    ||||||||||| ||||  |||| |||||||| | |||||||||||||||||||||||||||    
T  13218743 ccaagaaattcaagagt-ttgggtctctcccttgcaagaattcgagagcttggtctctccc 13218802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 3302494 - 3302449
Alignment:
Q  558 tccaagaattcgagagc-ttggtctctccctacctatcctttatcc 602  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||    
T  3302494 tccaagaattcaagagccttggtctctccctaccaatcctttatcc 3302449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 175; Significance: 8e-94; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 475 - 717
Target Start/End: Complemental strand, 12436 - 12195
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||| |||||    
T  12436 gataggaacttatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagagttcaagagc 12337  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaag 674  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  12336 ttggtctctccctacctatcctttatcccaatccctgaataactttcttttcctctgcatcttatttataataccaagtcctatagctgttacatagaag 12237  T
Q  675 tttagtaaacagcaattactacatacaagtaacggttacttat 717  Q
     |||||| ||| ||||||||||| ||||||||| |||||||||    
T  12236 -ttagtagacaacaattactacacacaagtaacagttacttat 12195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 475 - 694
Target Start/End: Complemental strand, 11288 - 11065
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  |||||||||    
T  11288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccttccaagttttcgagagc 11189  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagttgttacata 670  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||     ||||||||  ||||||||    
T  11188 ttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatttataatactaactctctcctatagcagttacata 11089  T
Q  671 gaagtttagtaaacagcaattact 694  Q
    ||||||||||| ||||||||||||    
T  11088 gaagtttagtagacagcaattact 11065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 170; Significance: 8e-91; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 500 - 717
Target Start/End: Original strand, 177889 - 178106
Alignment:
Q  500 actaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatccttta 599  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  177889 actaatggtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccctaccaatccttta 177988  T
Q  600 tcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaagtttagtaaacagcaattactacata 699  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||| |    
T  177989 ccccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaaatttagtagacagcaattactacaca 178088  T
Q  700 caagtaacggttacttat 717  Q
    |||||||| |||||||||    
T  178089 caagtaacagttacttat 178106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 157; Significance: 4e-83; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 475 - 651
Target Start/End: Complemental strand, 80929 - 80753
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  80929 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaataaattcgagagtcttggttctctcccctccaagaattcgagagc 80830  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  80829 ttggtctctccctacctatcctttatcccaatccctgaatacctttctttttctctgcatcttatttataatactaa 80753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 480 - 651
Target Start/End: Complemental strand, 79728 - 79557
Alignment:
Q  480 gaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggt 579  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  79728 gaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttggt 79629  T
Q  580 ctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 651  Q
    |||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  79628 ctctccgtacctatcctttatcctaatccatgaatacctttattttcctctgcatcttatttataatactaa 79557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 45036163 - 45036313
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45036163 tgatagaaatcaactgatatagaagaataaaatagggaaaattcctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 45036262  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45036263 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 45036313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 475 - 681
Target Start/End: Complemental strand, 40254615 - 40254410
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  40254615 gatagaaacagatatcaaaatataaattaatagtaatattacaatagaatcccaagaaattcgagagtcttggttctctcccctccaagaatt-gagagc 40254517  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa-ttcctatagttgttacatagaa 673  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || | |||||||  |||||||||||    
T  40254516 ttggtctctccctaccaatcctttatcccaatccctgaat-cctttcttttcctctgcatcttatttataatatgaactccctatagcagttacatagaa 40254418  T
Q  674 gtttagta 681  Q
    ||||||||    
T  40254417 gtttagta 40254410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 6540576 - 6540728
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgc-- 420  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||      
T  6540576 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca 6540675  T
Q  421 caaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6540676 caaaatggccccttcccagtcaagtcctcagatgcccctcaatcttcccatcc 6540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 13255714 - 13255565
Alignment:
Q  323 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 422  Q
    ||||||||| ||||||||| ||||||||||| | || ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13255714 tgatagaaaccaactgatatagaagaataaatttggtaaattcc-tttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca 13255616  T
Q  423 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13255615 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13255565  T

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Target: chr8; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 478 - 586
Target Start/End: Complemental strand, 21661290 - 21661182
Alignment:
Q  478 aggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttg 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  21661290 aggaactgatatcaaaatataaactaatagtaagattacaatatattcccaagaaattcgagagtcttggttctctcccctccaataattcgagagcttg 21661191  T
Q  578 gtctctccc 586  Q
    |||||||||    
T  21661190 gtctctccc 21661182  T

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Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 475 - 677
Target Start/End: Original strand, 2411062 - 2411264
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 574  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||  ||||||||||||||  |||| |||| |||||||||||||| ||||||  ||||    
T  2411062 gatagaaactgatatcaaaatataaactaatagtaatattacaatcgaatcccaagaaatttgagagtcttgattctctcccctccaggaattc--gagc 2411159  T
Q  575 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatc-ttatttataatactaa-ttcctatagttgttacataga 672  Q
    |||||||||||||||| ||||||||||| |||  | |||| ||  | |||||||||||| | || ||||||||||||| | |||||||  |||||||| |    
T  2411160 ttggtctctccctaccaatcctttatccaaataaccgaatgcccctattttcctctgcaactttgtttataatactaactccctatagaagttacataaa 2411259  T
Q  673 agttt 677  Q
    |||||    
T  2411260 agttt 2411264  T

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Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 475 - 549
Target Start/End: Original strand, 26246969 - 26247043
Alignment:
Q  475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggtt 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  26246969 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggtt 26247043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 586
Target Start/End: Original strand, 5176597 - 5176658
Alignment:
Q  524 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 586  Q
    ||||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  5176597 tcccaaggaattcgagagtcttgggtctctccc-tccaagaattcgagagcttggtctctccc 5176658  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 582
Target Start/End: Complemental strand, 26187599 - 26187541
Alignment:
Q  524 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctc 582  Q
    ||||||||||||  |||||||||| |||||||| |||||||||| ||||||||||||||    
T  26187599 tcccaagaaatttgagagccttgggtctctcccttccaagaatttgagagcttggtctc 26187541  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 602
Target Start/End: Complemental strand, 13261037 - 13260936
Alignment:
Q  502 taatagtaagattacaatataatcccaagaaattctagagccttggttctctccc-ctccaagaattcgagagcttggtctctccctacctatcctttat 600  Q
    |||||||||  |||||||| | ||||||||||||| |||| ||||| ||||||||  | |||||||  ||||||||  |||||||| ||| |||||||||    
T  13261037 taatagtaatgttacaataaattcccaagaaattcgagagtcttggatctctcccttttcaagaatcagagagcttattctctcccgaccaatcctttat 13260938  T
Q  601 cc 602  Q
    ||    
T  13260937 cc 13260936  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 676
Target Start/End: Original strand, 36241268 - 36241325
Alignment:
Q  621 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 676  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  36241268 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 36241325  T

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Target: scaffold0063 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 586
Target Start/End: Complemental strand, 33934 - 33903
Alignment:
Q  555 ccctccaagaattcgagagcttggtctctccc 586  Q
    ||||||||||||||||||||||||||||||||    
T  33934 ccctccaagaattcgagagcttggtctctccc 33903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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