View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_10 (Length: 496)
Name: NF1500_low_10
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 11339412 - 11339772
Alignment:
| Q |
18 |
ttttatagctcccaaacatgaaaacgacttcaagtggtatttttatttttcagaacaaaattcgacagtgttaataagtgataataatatctaagtccct |
117 |
Q |
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| T |
11339412 |
ttttatagctcccaaacctgaaaacaacttcaagtggtatttttatttttcagaacaaaatttgacagtattaataagtgataataatatgtaagttcct |
11339511 |
T |
|
| Q |
118 |
taaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnnctatttttagatgaggttatgtttttgcagtctagtgaga |
217 |
Q |
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| T |
11339512 |
taaaacttttcctaattgaattatattcatctgtcctaagatgaatcttataaaaaaacttt-tttttagatgaggttatgtttttgcagtccagtgaga |
11339610 |
T |
|
| Q |
218 |
catttataactgatttgtaaaacaatggtgcttcacggtggaatttcacttcaatccctcttgtgagttaattgataattgattgtaccagatattgtta |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11339611 |
catttataactgatttgtaaaacaatggtgtttcacggtggaatttcacttcaatccctcttgtgagttaattgataattgattgtaccagatatggtta |
11339710 |
T |
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| Q |
318 |
cggtaaagcatatactatatgatttgttgtcatatatactttgacacaagcagtagtgacaa |
379 |
Q |
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| T |
11339711 |
cggtaaagcatatactatatgatttgttgtcatatatactttgacacaagcagtagtgacaa |
11339772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 43378838 - 43379287
Alignment:
| Q |
18 |
ttttatagctcccaaacatgaaaacgacttcaagtggtatttttatttttcagaacaaaattcgacagtgttaataagtgataataatatctaagtccct |
117 |
Q |
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|||||||||||| |||| ||||| |||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||| ||| ||||||||| |
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| T |
43378838 |
ttttatagctccaaaaccataaaacaacttcaagtggtattt--atttttctgaacaaaatttgatagtgttaataagtgataatagtatgtaagtccct |
43378935 |
T |
|
| Q |
118 |
taaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnnctattttt----agatgaggttatgtttttgcagtctagt |
213 |
Q |
| |
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||||||| |||||||||||||| || |||||||||||||||| ||||| |||||||||||||||||||||||| ||| |
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| T |
43378936 |
taaaact----------gaattatattcatcggttctaagatgaatcttataaaaaaaaatgtttttttttaagatgaggttatgtttttgcagtcaagt |
43379025 |
T |
|
| Q |
214 |
gagacatttataactgatttgtaaaacaatggtgcttcacggtggaatttcacttcaatccctcttgtgagttaattgataattgattgtaccagatatt |
313 |
Q |
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| T |
43379026 |
gagacatttataactaatttgtaaaacaacggtgcttcacggtggaatttcacttcagtccctcttgtgagttaattgataactgattgtaccatatatt |
43379125 |
T |
|
| Q |
314 |
gttacggtaaagcatatactatatgatttgttgtcatatatactttgacacaagcagtagtgacaa--ctttaacggttggaagcggcggcgactgcggt |
411 |
Q |
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|| |||||||||| || ||||| |||||||| | ||||||||||||||||||||||| ||||| ||||| ||||| |||||||||| ||| |||| |
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| T |
43379126 |
gtaacggtaaagc--atgctatacaatttgttgcc--atatactttgacacaagcagtagcgacaaagctttaccggtttgaagcggcggtgacagcggc |
43379221 |
T |
|
| Q |
412 |
gatgataacgacatgtgatattgagggtgagttgggtgaggtaacgtggagtagaaggggaggatg |
477 |
Q |
| |
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| T |
43379222 |
gaagataacgacatgtgttattgagggtgagttgggcaaggcaacgtggagtagaaggggaggatg |
43379287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 13207611 - 13208065
Alignment:
| Q |
18 |
ttttatagctcccaaacatgaaaacgacttcaagtggtatttttatttttcagaacaaaattcgacagtgttaataagtgataataatatctaagtccct |
117 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||| ||| ||||||||| |
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| T |
13207611 |
ttttatagctccaaaaccataaaacaacttcaagtggtattt--atttttctgaacaaaatttgatagtgttaataagtgataatagtatgtaagtccct |
13207708 |
T |
|
| Q |
118 |
taaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnnctattttt-----agatgaggttatgtttttgcagtctag |
212 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||| | ||||| |||| ||||||||||||||||||| || |
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| T |
13207709 |
taaaact----------gaattatattcatctgttctaagatgaatcttataaaaaaaatttttttttttttaagattaggttatgtttttgcagtcaag |
13207798 |
T |
|
| Q |
213 |
tgagacatttataactgatttgtaaaacaatggtgcttcacggtggaatttcacttcaatccctcttgtgagttaattgataattgattgtaccagatat |
312 |
Q |
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|||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||| |
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| T |
13207799 |
tgagacatttataactaatttgtaaaacaacggtgctttacggtggaatttcacttcagtccctcttgcgagttaattgataactgattgtaccatatat |
13207898 |
T |
|
| Q |
313 |
tgttacggtaaagcatatactatatgatttgttgtcatatatactttgacacaagcagtagtgacaa--ctttaacggttggaagcggcggcgactgcgg |
410 |
Q |
| |
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||| ||| |||||| || |||||| ||||| || | ||||||||||||||||||||||||||||| ||||| ||||| ||||||| || ||| |||| |
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| T |
13207899 |
tgtaacgataaagc--atgctatataatttgctgcc--atatactttgacacaagcagtagtgacaaagctttaccggtttgaagcggtggtgacagcgg |
13207994 |
T |
|
| Q |
411 |
tgatgataacgacatgtgatattgagggtgagttgggtgaggtaacgtggagtagaaggggaggatgctgc |
481 |
Q |
| |
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|| |||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
13207995 |
cgaagataacaacatgtgttattgagggtgagttgggcaaggcaacgtggagtagaaggggaggatgctgc |
13208065 |
T |
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