View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_11 (Length: 474)
Name: NF1500_low_11
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 7622969 - 7623425
Alignment:
| Q |
1 |
caaaccactactgctgaacttgtgtctgttcctgcaataaagatgttctgcnnnnnnnnnnnnnnnnnngcatatgtttagttaacatcataaacttaac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7622969 |
caaaccactactgctgaacttgtgtctgttcctgcaataaagatgttctgcatataatatataatatatgcatatgtttagttaacatcataaacttaac |
7623068 |
T |
|
| Q |
101 |
tattgatttatagatcatcttgtttaataaagcatcaaaagtttcattcatcataccataagcacagctttgacgtggtcaagagtaagatcaaaagaga |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623069 |
tattgat--------catcttgtttaataaagcatcaaaagtttcattcatcataccataagcacagctttgacgtggtcaagagtaagatcaaaagaga |
7623160 |
T |
|
| Q |
201 |
gtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaacttcttgttccttggttgtaggctttgttgaattatccatgtggtcatcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7623161 |
gtgagttatcattcatcatctgcaaaaatatatcaatgatatctgcaacttcttgctccttggttttaggctttgttgaattatccatgtggtcatcaat |
7623260 |
T |
|
| Q |
301 |
gacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaataatggaaaatgatca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7623261 |
gacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaacaatggaaaatgatca |
7623360 |
T |
|
| Q |
401 |
gaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttct |
465 |
Q |
| |
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|
| T |
7623361 |
gaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttct |
7623425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 153 - 462
Target Start/End: Original strand, 7636205 - 7636514
Alignment:
| Q |
153 |
ataccataagcacagctttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaacttc |
252 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||| || ||||| | ||||| |
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|
| T |
7636205 |
ataccataagcacagctttgatgtggtcaagagtgagatcaaaagagagtgagtgatcattcatcatctgcaataagatatcaataatatcatctacttc |
7636304 |
T |
|
| Q |
253 |
ttgttccttggttgtaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctccca |
352 |
Q |
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||||||||| ||| ||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7636305 |
ttgttccttagttttaggccttgctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctccca |
7636404 |
T |
|
| Q |
353 |
agagttcctttgattctatcaacccaacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgca |
452 |
Q |
| |
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||||||||||||| |||||||| |||||| || |||||||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||| |
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| T |
7636405 |
agagttcctttgactctatcaatccaacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgca |
7636504 |
T |
|
| Q |
453 |
atctacttct |
462 |
Q |
| |
|
|||||||||| |
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|
| T |
7636505 |
atctacttct |
7636514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 152 - 462
Target Start/End: Original strand, 7629421 - 7629731
Alignment:
| Q |
152 |
cataccataagcacagctttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaactt |
251 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| ||||||||||||||||| | |||||||||||| || || || ||||| || ||||| | |||| |
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|
| T |
7629421 |
cataccataagcacagctttgatgtggtcgagagtgagatcaaaagagagtgaatgatcattcatcatttgtaataagatatcaataatatcatctactt |
7629520 |
T |
|
| Q |
252 |
cttgttccttggttgtaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctccc |
351 |
Q |
| |
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|||||||||| ||| ||||| ||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7629521 |
cttgttccttagttttaggccttgctgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctccc |
7629620 |
T |
|
| Q |
352 |
aagagttcctttgattctatcaacccaacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgc |
451 |
Q |
| |
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||| |||||||||| |||||||| |||||| || |||||||||| ||| ||||||||||| |||| |||||||| || ||||||||||||||||||||| |
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| T |
7629621 |
aagtgttcctttgactctatcaatccaaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgc |
7629720 |
T |
|
| Q |
452 |
aatctacttct |
462 |
Q |
| |
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||||||||||| |
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|
| T |
7629721 |
aatctacttct |
7629731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7627520 - 7627570
Alignment:
| Q |
1 |
caaaccactactgctgaacttgtgtctgttcctgcaataaagatgttctgc |
51 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7627520 |
caaaccactgctgctgaacttgtgtctgttcctgcaataaagatgttctgc |
7627570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7634656 - 7634706
Alignment:
| Q |
1 |
caaaccactactgctgaacttgtgtctgttcctgcaataaagatgttctgc |
51 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
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| T |
7634656 |
caaaccactattgctgaacttgtgtctgttcctgctataaaaatgttctgc |
7634706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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