View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_13 (Length: 457)
Name: NF1500_low_13
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 82 - 445
Target Start/End: Complemental strand, 29778372 - 29778017
Alignment:
| Q |
82 |
gacaattcaaattacacaattttaaagatctacgtgaagcaaagtcatttccaaaaagattgttacttataaattataatgcaccaaaagcaaaaggaaa |
181 |
Q |
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| T |
29778372 |
gacaattcaaattacagaattttaaagatctacgtgaagcaaagtcatttccaaaaagagtgttacttagaa-------tgcaacaaaaggaaa-ggaaa |
29778281 |
T |
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| Q |
182 |
caacaaatttccaaaagggtaagaaatcataccatcaaatcctgaatttggatggtaaagaaagaaattggtagcttcaaaaccaagaagaggaagcctt |
281 |
Q |
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| T |
29778280 |
caagaaatttccaaaagggtaagaaatcataccatcaaatcctgaatttggatggtaaagaaagaaattggtagcttcaaaaccaagaacaggaagcctt |
29778181 |
T |
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| Q |
282 |
ccttctcttgcataagatttaagagtaatatcaatgaccccagaaacaagctctttctcattcaccacaaaccttataggacctgaacttcccatgatgt |
381 |
Q |
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| T |
29778180 |
ccttgtcttgcataagatttaagagcagtatcaatgacccctgaaacaagctctttctcatttaccacaaaccttaaaggacccgaacttcccatgatgt |
29778081 |
T |
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| Q |
382 |
taatagttaccaagaacctattgattctacttgttttctggtctcccctattctcgttcatctc |
445 |
Q |
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| T |
29778080 |
taatagttaccaagaacctattgattctgcttgttttctggtctccactattcttgttcttctc |
29778017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 155 - 445
Target Start/End: Complemental strand, 29782379 - 29782089
Alignment:
| Q |
155 |
ttataatgcaccaaaagcaaaaggaaacaacaaatttccaaaagggtaagaaatcataccatcaaatcctgaatttggatggtaaagaaagaaattggta |
254 |
Q |
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| T |
29782379 |
ttatgatgcaccaaaaagaaaaggaaataacaaatttccaacagggtaagcaaccataccatcaaatccagcatttggataataaagaaggaaatcagca |
29782280 |
T |
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| Q |
255 |
gcttcaaaaccaagaagaggaagccttccttctcttgcataagatttaagagtaatatcaatgaccccagaaacaagctctttctcattcaccacaaacc |
354 |
Q |
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| T |
29782279 |
gcattgaaaccaagaagaggaagccttccttgtcttgcataagatttaagagcaatatcaatgaccccagaaacaagctctttctcattcacaacaaacc |
29782180 |
T |
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| Q |
355 |
ttataggacctgaacttcccatgatgttaatagttaccaagaacctattgattctacttgttttctggtctcccctattctcgttcatctc |
445 |
Q |
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| T |
29782179 |
ttataggacccgaacttcccatgatgttaatagtgaccaagaacttattaattctgcttgttttttggtctcccctattcttgttcttctc |
29782089 |
T |
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