View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_14 (Length: 455)
Name: NF1500_low_14
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 28089297 - 28089732
Alignment:
| Q |
15 |
actaacaactactaattactattattgtcatttaaagaaagctgagttttgatgagaaataaatctgaagtatcacttatgtatttcatctcatataaac |
114 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089297 |
actaacaactactaattactgttattgtcatttaaagaaagctgagttttgatgagaaataaatctgaagtatcacttatgtatttcatctcatataaac |
28089396 |
T |
|
| Q |
115 |
aagtaaaagatatagtgtagagttttcatcatgaaacatgagatttaagttagtctagtctttgtccgtgttaaatatgatataaaatcatttttatagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089397 |
aagtaaaagatatagtgtagagttttcatcatgaaacatgagatttaagttagtctagtctttgtccgtgttaaatatgatataaaatcatttttatagc |
28089496 |
T |
|
| Q |
215 |
ttaagctttttggattgttatttcatgagatggttgttagaatattttggtcttaaatatggtataagagcctttatgaccaagcggtctatagagttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089497 |
ttaagctttttggattgttatttcatgagatggttgttagaatattttggtcttaaatatggtataagagcctttatgaccaagcggtctatagagttca |
28089596 |
T |
|
| Q |
315 |
attcttaataacaaattggattacaattcaggtaggtagacctatacagtcagtgtccatgtttcaggcctaatttacttttgcatgaggccattttaga |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089597 |
attcttaataacaaattggattccaattcaggtaggtagacctatacagtcagtgtccatgtttcaggcctaatttacttttgcatgaggccattttaga |
28089696 |
T |
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| Q |
415 |
aatatactgt--aaaatcttatgtatcttcatctca |
448 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
28089697 |
aatatactgtaaaaaatcttatgtatcttcatctca |
28089732 |
T |
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