View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_16 (Length: 435)

Name: NF1500_low_16
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_16
NF1500_low_16
[»] chr8 (3 HSPs)
chr8 (19-289)||(42233507-42233778)
chr8 (326-397)||(17521882-17521953)
chr8 (326-389)||(29316252-29316314)
[»] chr5 (7 HSPs)
chr5 (324-401)||(4126937-4127014)
chr5 (332-399)||(4560049-4560116)
chr5 (324-401)||(4126298-4126374)
chr5 (287-365)||(509432-509503)
chr5 (289-324)||(19083960-19083995)
chr5 (324-401)||(4561317-4561393)
chr5 (288-324)||(30335803-30335839)
[»] chr3 (3 HSPs)
chr3 (335-401)||(27002385-27002451)
chr3 (329-401)||(27001744-27001816)
chr3 (290-330)||(27958884-27958924)
[»] chr7 (1 HSPs)
chr7 (323-399)||(3777840-3777916)
[»] chr1 (2 HSPs)
chr1 (328-401)||(44006207-44006280)
chr1 (324-356)||(44005710-44005742)
[»] chr2 (1 HSPs)
chr2 (290-324)||(16147669-16147703)
[»] chr4 (2 HSPs)
chr4 (287-324)||(22681978-22682015)
chr4 (31-71)||(11862995-11863035)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 42233778 - 42233507
Alignment:
Q  19 tcctaagaggttcacattgaattaaatgtaacataaacatatgtttataagtgagagtttaggtggggaggggaagggaaaactttagattagattacat 118  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42233778 tcctaagaggctcacattaaattaaatgtaacataaacatatgtttataagtgagagtttaggtggggaggggaagggaaaactttagattagattacat 42233679  T
Q  119 gaagaataaaaggaaaatgaaagaaatattcgccctctaacttgaatgtaagagtctatttttcttcattgtacaaaatcaccacaaatgaagaaact-a 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42233678 gaagaataaaaggaaaatgaaagaaatattcgccctctaacttgaatgtaagagtctatttttcttcattgtacaaaatcaccacaaatgaagaaactaa 42233579  T
Q  218 aaataggtattggagagagattttgaaggattttttaggctcacataaaatcttcaaactcaatttatgtaa 289  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  42233578 aaaaaggtattggagagagattttggaggattttttaggctcacataaaatcttcaaatccaatttatgtaa 42233507  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 17521953 - 17521882
Alignment:
Q  326 aggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaa 397  Q
    ||||||| |||||||||| ||||||||||||||||||||  |||||| |||||||||| ||||| |||||||    
T  17521953 aggataagcagtaattaaagcacccactattataggtttctccaaattttattaatgagcaaattttgaaaa 17521882  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 29316314 - 29316252
Alignment:
Q  326 aggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaat 389  Q
    |||||||| |||||||||| ||||| || ||||||||||  | |||||||||||||||||||||    
T  29316314 aggataaagagtaattaatacacccgct-ttataggtttctctaaatcttattaatgaccaaat 29316252  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 4127014 - 4126937
Alignment:
Q  324 acaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 401  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  4127014 acaggataagcagtaattaatgcacccactattataggttttttcaaatcttattaatgaccaaatcttaaaaattga 4126937  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 4560049 - 4560116
Alignment:
Q  332 aacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaatt 399  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  4560049 aacagtaattaatgcacccactattataggtttctctaaatcttattaatgaccaaatcttgaaaatt 4560116  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 4126298 - 4126374
Alignment:
Q  324 acaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 401  Q
    |||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||||| |||||||| ||||||||    
T  4126298 acaggataaacagtaattaaagcacccactattatagatttctccaaatcttattaatgagcaaatctt-aaaattga 4126374  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 509503 - 509432
Alignment:
Q  287 taagggtttttctaacccatgcaagattgcacaggatacaggataaacagtaattaatgcacccactattataggtttt 365  Q
    |||| ||||||||||||| |||||||||||| ||||||       | |||||||||||||||||||| |||||||||||    
T  509503 taagagtttttctaacccgtgcaagattgcaaaggata-------agcagtaattaatgcacccactgttataggtttt 509432  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 19083995 - 19083960
Alignment:
Q  289 agggtttttctaacccatgcaagattgcacaggata 324  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19083995 agggtttttctaacctatgcaagattgcacaggata 19083960  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 4561393 - 4561317
Alignment:
Q  324 acaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 401  Q
    |||||||||  ||| || ||| ||||||||||| |||||||  || |||||||||||||| |||||||| ||||||||    
T  4561393 acaggataagtagtgatcaatacacccactattgtaggtttcgccgaatcttattaatgatcaaatctt-aaaattga 4561317  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 30335803 - 30335839
Alignment:
Q  288 aagggtttttctaacccatgcaagattgcacaggata 324  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30335803 aagggtttttctaacctgtgcaagattgcacaggata 30335839  T

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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 335 - 401
Target Start/End: Complemental strand, 27002451 - 27002385
Alignment:
Q  335 agtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 401  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  27002451 agtaattaatgcacccactattataggtttttccaaattttattaatgaccaaatcttgaaaattga 27002385  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 329 - 401
Target Start/End: Original strand, 27001744 - 27001816
Alignment:
Q  329 ataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 401  Q
    |||| |||||||||| |||||||||||||||| |||  ||||||||||||||||| |||||||||||||||||    
T  27001744 ataagcagtaattaaagcacccactattatagatttctccaaatcttattaatgagcaaatcttgaaaattga 27001816  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 27958884 - 27958924
Alignment:
Q  290 gggtttttctaacccatgcaagattgcacaggatacaggat 330  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  27958884 gggtttttctaacctgtgcaagattgcacaggataaaggat 27958924  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 3777916 - 3777840
Alignment:
Q  323 tacaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaatt 399  Q
    |||||||||| ||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||| ||||||    
T  3777916 tacaggataagcagtaattaatgcacccactattgtaggtttctccaaatcttaataatgaccaaatcttaaaaatt 3777840  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 44006280 - 44006207
Alignment:
Q  328 gataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatcttgaaaattga 401  Q
    ||||| |||||||||| ||||||||||||||| ||||  |||||||||||| | || |||||||||||||||||    
T  44006280 gataagcagtaattaaagcacccactattataagtttctccaaatcttattcaggagcaaatcttgaaaattga 44006207  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 44005710 - 44005742
Alignment:
Q  324 acaggataaacagtaattaatgcacccactatt 356  Q
    |||||||||| ||||||||||||||||||||||    
T  44005710 acaggataaagagtaattaatgcacccactatt 44005742  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 16147669 - 16147703
Alignment:
Q  290 gggtttttctaacccatgcaagattgcacaggata 324  Q
    |||||||||||||| ||||||||||||||||||||    
T  16147669 gggtttttctaacctatgcaagattgcacaggata 16147703  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 22681978 - 22682015
Alignment:
Q  287 taagggtttttctaacccatgcaagattgcacaggata 324  Q
    |||||||||||||||||  |||||||||||||||||||    
T  22681978 taagggtttttctaacctgtgcaagattgcacaggata 22682015  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 11863035 - 11862995
Alignment:
Q  31 cacattgaattaaatgtaacataaacatatgtttataagtg 71  Q
    |||| |||| ||||| |||||||||||||||||||||||||    
T  11863035 cacagtgaaataaatataacataaacatatgtttataagtg 11862995  T

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