View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_17 (Length: 428)
Name: NF1500_low_17
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 95 - 404
Target Start/End: Complemental strand, 32112777 - 32112468
Alignment:
| Q |
95 |
caccattgagaaggaacaaaaggaaaagaaaattatgacacaagggagttgctatttacattcttctttactttcagcattggcaaggttgaagagcatg |
194 |
Q |
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| T |
32112777 |
caccattgagaaggaacaaaaggaaaagaaaattatgacacaagggagttgctatttacattcttcgttactttcagcattggcaaggttgaagagcatg |
32112678 |
T |
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| Q |
195 |
aagaataatatcccaacagaaatgctaataaggaagttgctatttacattcttcattattccttaatgatcaaattaaggtcacttagttgattatgtgc |
294 |
Q |
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| T |
32112677 |
aagaataatatcccaacataaatgctaataaggaagttgctatttacattcttcattattccttaatgatcaaattaaggtcacttagttgattatgtgc |
32112578 |
T |
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| Q |
295 |
ttgtgaatgaatgttgggtttgcattatctatgttgtgctttcaatggacacttatttatatcttgttttagaacaatatttgttgagattaaaactagg |
394 |
Q |
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| T |
32112577 |
ctgtgaatgaatgttgggtttgcattatctatgttgtgctttcaatggacacttatttatatcttgttttagaacaatatttgttgagattaaaactagg |
32112478 |
T |
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| Q |
395 |
acaaatattg |
404 |
Q |
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| |||||||| |
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| T |
32112477 |
aaaaatattg |
32112468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 32112829 - 32112794
Alignment:
| Q |
44 |
cccttcaaattgtagttcaataactatttagtttct |
79 |
Q |
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| T |
32112829 |
cccttcaaattgtagttcaataactatttagtttct |
32112794 |
T |
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