View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_28 (Length: 335)
Name: NF1500_low_28
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 7047325 - 7047018
Alignment:
| Q |
16 |
cattgttatctaaaattgcagtctttgatgattgcatccattcccaatattattggttggttgatgatctcatttgcaaatgtaagtttgaatcattttg |
115 |
Q |
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| T |
7047325 |
cattgttatctaaaattgcagtctttgatgattgcatccattcccaatattattggttggttgatgatctcatttgcaaatgtaagtttgaatcattttg |
7047226 |
T |
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| Q |
116 |
atttttgctcaatttccttaagttcttattttcccgagtttggtattcataacatgttttgcatttgtacacagagatgtcaactcaatggtaagtgttt |
215 |
Q |
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| T |
7047225 |
attttttctcaatttccttaagttcttattttcctgagtttggtattcataacatgttttgcatttgtacacggagatgtcaactcagtagtaagtgttt |
7047126 |
T |
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| Q |
216 |
gaccttatagcctcaagggaccgagttcaaatccctacggtgataaaacgactattagtgttacttcaattaataacataacaatatttgcatctttcag |
315 |
Q |
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| T |
7047125 |
gaccttataacctcaagggaccgagttcaaatccctatggtgataaaacgactattagtgttacttcaattaataacataacaatatttgcatctttcag |
7047026 |
T |
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| Q |
316 |
gattcttc |
323 |
Q |
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| T |
7047025 |
gattcttc |
7047018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 41337654 - 41337709
Alignment:
| Q |
193 |
tgtcaactcaatggtaagtgtttgaccttatagcctcaagggaccgagttcaaatcc |
249 |
Q |
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| T |
41337654 |
tgtcagctcagtggtaagagtttgaccttataacctcaaggg-cggagttcaaatcc |
41337709 |
T |
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