View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_31 (Length: 329)
Name: NF1500_low_31
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 26621844 - 26621534
Alignment:
| Q |
17 |
atattagtaaaaggaaatgaagaaagaatacttgggtggactagaccaaaactgaaggatgcacaaaagaagcataatcaattgtctt---attaaaaac |
113 |
Q |
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| T |
26621844 |
atattagtaaaaggaaatgaagaaagaatactcgggtggactagaccaaaactgaaggatgcataaaagaagcataatcaattgtcttataattaaaaac |
26621745 |
T |
|
| Q |
114 |
cttacctataaaacttactgagataaaaccaaggtgaagagaaaacgagtgtag-----------------aagttagcaaaatttatgctaaggtagat |
196 |
Q |
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| T |
26621744 |
cttacctataaaacttactgagataaaaccaaggtgaagagaaaccgagtgtagtgctcaacccaaacaaaaagttagcaaaatttatgctaaggtagat |
26621645 |
T |
|
| Q |
197 |
caattcattcatagtaaataaattcaagaaactatgaggaatagcctcccaccattggtagttcagttgttcaaatggggtgaaggttggcaagcttgtg |
296 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26621644 |
caattcattcatagtaaatacattcaagaaactatgaggaatagcctcccaccattggt-----agttgttcaaatggggtgaaggttggcaagcttgtg |
26621550 |
T |
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| Q |
297 |
agcgcattgagtgact |
312 |
Q |
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|||||||||||||||| |
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| T |
26621549 |
agcgcattgagtgact |
26621534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 26609283 - 26608978
Alignment:
| Q |
17 |
atattagtaaaaggaaatgaagaaagaatacttgggtggactagaccaaaactgaaggatgcacaaaagaagcataatcaattgtcttattaaaaacctt |
116 |
Q |
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||||||||||||||||| |||||| |||||| |||||||||| |||| | || ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26609283 |
atattagtaaaaggaaacaaagaaacaatactcgggtggactatgtcaaagcccaatgatgcacaaaagatgcataatcaattgtcttattaaaaacctt |
26609184 |
T |
|
| Q |
117 |
acctataaaacttactgagataaaaccaaggtgaagagaaaacgagtgt---------------agaagttagcaaaatttatgctaaggtagatcaatt |
201 |
Q |
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| || ||||| ||| || ||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||| |
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| T |
26609183 |
atctgtaaaatttagtgggataaaaccaaggtgaagagaaaacgagtgtaatgctcaacaaataaaaagttaacaaaatttatgctcaggtagatcaatt |
26609084 |
T |
|
| Q |
202 |
cattcatagtaaataaattcaagaaactatgaggaatagcctcccaccattggtagttcagttgttcaaatggggtgaaggttggcaagcttgtgagcgc |
301 |
Q |
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||| ||||||||| |||||||| | ||||||||||||||||||||||||||| | ||||||||||| | |||||||||||||||||| ||||| |
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| T |
26609083 |
atttcgtagtaaatacattcaagatattatgaggaatagcctcccaccattggt-----aattgttcaaatgatgcgaaggttggcaagcttgttagcgc |
26608989 |
T |
|
| Q |
302 |
attgagtgact |
312 |
Q |
| |
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||||||||||| |
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| T |
26608988 |
attgagtgact |
26608978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 312
Target Start/End: Complemental strand, 26619694 - 26619549
Alignment:
| Q |
168 |
aagttagcaaaatttatgctaaggtagatcaattcattcatagtaaataaattcaag------aaactatgaggaatagcctcccaccattggtagttca |
261 |
Q |
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|||||| | ||||||||||| |||||||||||||| ||| ||||||||| ||||||| | ||||||||||||||||||||||||||| || |
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| T |
26619694 |
aagttaactaaatttatgctcaggtagatcaattctttcgtagtaaatacattcaagataataatactatgaggaatagcctcccaccattg-----aca |
26619600 |
T |
|
| Q |
262 |
gttgttcaaatggggtgaaggttggcaagcttgtgagcgcattgagtgact |
312 |
Q |
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||||| || || | ||||||||||||||||| |||||||||||||||| |
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| T |
26619599 |
attgttaaagtgatgcaaaggttggcaagcttgttagcgcattgagtgact |
26619549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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