View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_32 (Length: 323)

Name: NF1500_low_32
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_32
NF1500_low_32
[»] chr1 (7 HSPs)
chr1 (14-303)||(1524267-1524556)
chr1 (29-93)||(43297868-43297932)
chr1 (15-94)||(31325512-31325591)
chr1 (13-87)||(50451411-50451485)
chr1 (17-94)||(20284358-20284435)
chr1 (32-94)||(5193633-5193695)
chr1 (17-91)||(23464849-23464923)
[»] chr8 (2 HSPs)
chr8 (44-309)||(38347762-38348028)
chr8 (17-94)||(23133146-23133223)
[»] chr3 (5 HSPs)
chr3 (13-94)||(26433255-26433336)
chr3 (29-90)||(38647758-38647819)
chr3 (28-94)||(11896657-11896723)
chr3 (29-94)||(55025378-55025443)
chr3 (29-83)||(53608876-53608930)
[»] chr6 (2 HSPs)
chr6 (14-94)||(12646660-12646740)
chr6 (13-120)||(35232969-35233076)
[»] chr5 (3 HSPs)
chr5 (182-309)||(23944309-23944436)
chr5 (20-94)||(23944524-23944598)
chr5 (13-81)||(7813346-7813414)
[»] chr7 (1 HSPs)
chr7 (17-94)||(16770528-16770605)
[»] chr2 (4 HSPs)
chr2 (29-94)||(572698-572763)
chr2 (13-94)||(14654237-14654318)
chr2 (29-93)||(42403793-42403857)
chr2 (17-117)||(19264899-19264999)
[»] chr4 (3 HSPs)
chr4 (17-93)||(46785039-46785115)
chr4 (29-87)||(3881228-3881286)
chr4 (32-93)||(48846453-48846514)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 1524556 - 1524267
Alignment:
Q  14 atatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggcattgaagacttcggttttgg 113  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1524556 atatgccagtatttcttgaagaagatgcattgaaaaccatcagggtcgggtgctttgtaaggttttatggagttaagggcattgaagacttcggttttgg 1524457  T
Q  114 tgataggacatgtgagggagttcttactaggctcatcaatggtggggtgtaggccgaaattgaaggtgcggttttgatggggttgggtgttggccaaaag 213  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1524456 tgataggacatgtgagggaggtcttgctaggctcgtcaatggtggggtgtaggccgaaattgaaggtgcggttttgatagggttgggtgttggccaaaag 1524357  T
Q  214 gttcttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattctatt 303  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1524356 gttcttgaaatatttttttgcttccgcttggagaatggaatcatcagaggaccaagtgtcattagggagttggagcctgtgaattctatt 1524267  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 43297932 - 43297868
Alignment:
Q  29 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggc 93  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  43297932 ttgaagaagatgcaatggaagccatcagggtcgggtgctttgtagggtttcatggagttaagggc 43297868  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 31325512 - 31325591
Alignment:
Q  15 tatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    ||||||| ||||  ||||||||||| || ||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  31325512 tatgccaatattgtttgaagaagatacaatggaaaccatctgagtcaggtgctttgtaaggtttcatggagttaagggca 31325591  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 50451485 - 50451411
Alignment:
Q  13 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagtt 87  Q
    |||||||||||| |  |||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||||||    
T  50451485 aatatgccagtactgtttgaagaagatgcaatggaaaccatccgggccgggagctttataaggtttcatggagtt 50451411  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 20284435 - 20284358
Alignment:
Q  17 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    |||||||| | ||||||||||||||| ||||||||||| ||  | || |||||||| |||||||||||||||||||||    
T  20284435 tgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggca 20284358  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 5193633 - 5193695
Alignment:
Q  32 aagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    ||||||||||| |||||  |||| ||||||||||||||||| ||||||||||| |||||||||    
T  5193633 aagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggca 5193695  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 23464923 - 23464849
Alignment:
Q  17 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagg 91  Q
    ||||||||||  ||||| || ||||||||||| ||||| ||  | |||||||||||||||||||| |||||||||    
T  23464923 tgccagtattgtttgaaaaaaatgcattggaagccatctggtcctggtgctttgtaaggtttcatagagttaagg 23464849  T

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Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 44 - 309
Target Start/End: Complemental strand, 38348028 - 38347762
Alignment:
Q  44 tggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggcattgaagacttcggttttggtgataggacatgtgagggagttcttactag 143  Q
    |||||||||||| |||| || |||||||| |||| |||||||||||||||| ||||||||||||||||  |||| ||||| ||||||||| |||| || |    
T  38348028 tggaaaccatcaaggtccggcgctttgtagggttgcatggagttaagggcagtgaagacttcggttttaatgatgggacaagtgagggagatcttgcttg 38347929  T
Q  144 gctcatcaatggtggggtgtaggccgaaattgaaggtgcggttttgatggggttgggtgttggccaaaaggttcttgaa-atatttttgtgcttccgctt 242  Q
    | |||||||||||||||||||||||| | || |||||||||||||| || ||||| | ||| |||||||||||||||||  | |||||| |||| |||||    
T  38347928 gttcatcaatggtggggtgtaggccgtagttaaaggtgcggttttggtgtggttgagagttagccaaaaggttcttgaatttttttttgagctttcgctt 38347829  T
Q  243 ggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattctatttttctt 309  Q
    |||||||||  |||||||| ||||| ||||||||||||||||| || || |||||| |||| |||||    
T  38347828 ggagaatggtgtcatcagaagaccaggtgccattagggagttgtagtctatgaattatattattctt 38347762  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 23133146 - 23133223
Alignment:
Q  17 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    |||||||| | ||||||||||||||| ||||||||||| ||  | || |||||||| |||||||||||||||||||||    
T  23133146 tgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggca 23133223  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 26433255 - 26433336
Alignment:
Q  13 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    |||||||||||| |  |||||||||||||| ||||||||||||||  | || ||||||||||| ||||||||||||||||||    
T  26433255 aatatgccagtactgtttgaagaagatgcaatggaaaccatcaggaccaggggctttgtaaggcttcatggagttaagggca 26433336  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 38647758 - 38647819
Alignment:
Q  29 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaag 90  Q
    ||||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  38647758 ttgaagaagatacaatggaaaccatctgggccgggtgctttgtaaggtttcatggagttaag 38647819  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 11896723 - 11896657
Alignment:
Q  28 cttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    ||||||||||||||| ||||||||||| ||  | || |||||||| |||||||||||||||||||||    
T  11896723 cttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggca 11896657  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 55025378 - 55025443
Alignment:
Q  29 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    ||||| || ||||||||||||||||| ||| | || ||||||||||||||||||| ||||||||||    
T  55025378 ttgaaaaatatgcattggaaaccatctgggccaggagctttgtaaggtttcatggtgttaagggca 55025443  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 53608876 - 53608930
Alignment:
Q  29 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatgg 83  Q
    ||||||||||||||||||||||||||||   |||| ||||| ||||| |||||||    
T  53608876 ttgaagaagatgcattggaaaccatcagcaccgggggctttataaggcttcatgg 53608930  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 12646660 - 12646740
Alignment:
Q  14 atatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    |||||||| |||| ||||||||| |||| |||||| ||||| ||| | |||||||||||||||||||||||||| ||||||    
T  12646660 atatgccaatattgcttgaagaaaatgctttggaagccatccgggccaggtgctttgtaaggtttcatggagtttagggca 12646740  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 35233076 - 35232969
Alignment:
Q  13 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggcattgaagacttcggttttg 112  Q
    ||||||||| |||| ||||||||| ||||| ||||||||||| ||  | || |||||||| |||||||||||||| ||||||   ||||||||  ||||     
T  35233076 aatatgccaatattgcttgaagaatatgcaatggaaaccatctggtcctggagctttgtagggtttcatggagtttagggcagcaaagacttcattttta 35232977  T
Q  113 gtgatagg 120  Q
    ||||||||    
T  35232976 gtgatagg 35232969  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 23944436 - 23944309
Alignment:
Q  182 cggttttgatggggttgggtgttggccaaaaggttcttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattaggga 281  Q
    ||||| ||||| |||||||||||||| || |||||||||||||| ||||| |||||  ||||||||| ||  |  ||||  | |||| | ||||||||||    
T  23944436 cggttatgatgaggttgggtgttggcaaagaggttcttgaaatacttttgagcttcttcttggagaacggtgttgtcagttgtccaaataccattaggga 23944337  T
Q  282 gttggagcctgtgaattctatttttctt 309  Q
    |||| ||||| ||||||||||| |||||    
T  23944336 gttgaagcctatgaattctattattctt 23944309  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 23944598 - 23944524
Alignment:
Q  20 cagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    ||||||| |||||||||||| ||||| |||||||| ||| | || |||||| | |||||||||| ||||||||||    
T  23944598 cagtattgcttgaagaagatacattgaaaaccatctgggccaggggctttgaagggtttcatggtgttaagggca 23944524  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 7813414 - 7813346
Alignment:
Q  13 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcat 81  Q
    |||||||||||| |  ||||||||||| || |||||||| |||||  | || |||||||||||||||||    
T  7813414 aatatgccagtactgtttgaagaagatacaatggaaaccgtcaggtcctggggctttgtaaggtttcat 7813346  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 16770528 - 16770605
Alignment:
Q  17 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    ||||||||||  ||||| || ||||||||||||||||| ||  | |||||||||||||||||||| ||||||||||||    
T  16770528 tgccagtattgtttgaaaaaaatgcattggaaaccatccggacctggtgctttgtaaggtttcatagagttaagggca 16770605  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 572763 - 572698
Alignment:
Q  29 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    |||||||||||||| ||||| ||||| ||  ||||||||||||| |||||||||||||||||||||    
T  572763 ttgaagaagatgcaatggaagccatctggcccgggtgctttgtagggtttcatggagttaagggca 572698  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 14654237 - 14654318
Alignment:
Q  13 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 94  Q
    ||||||| |||| | ||||||||||||||| ||||||||||| ||  | || |||||||| || ||||||||||||||||||    
T  14654237 aatatgctagtactgcttgaagaagatgcaatggaaaccatctggaccaggggctttgtagggcttcatggagttaagggca 14654318  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 42403793 - 42403857
Alignment:
Q  29 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggc 93  Q
    |||||||||||||| ||||||||||||||  | ||||| |||||||| ||||| ||||| |||||    
T  42403793 ttgaagaagatgcaatggaaaccatcaggaccaggtgccttgtaaggcttcatagagttgagggc 42403857  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 19264999 - 19264899
Alignment:
Q  17 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggcattgaagacttcggttttggtga 116  Q
    ||||||||||  |||||||| ||||| || || ||||||||  | || |||||||| || ||||| ||||| ||||||  ||| ||||||||||| ||||    
T  19264999 tgccagtattgtttgaagaaaatgcaatgaaacccatcaggaccaggggctttgtatggcttcatagagttgagggcagcgaacacttcggttttagtga 19264900  T
Q  117 t 117  Q
    |    
T  19264899 t 19264899  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 46785039 - 46785115
Alignment:
Q  17 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggc 93  Q
    ||||||||||  |||||||||||||||||||||||||| ||  | || | |||||| |||||||||||||| |||||    
T  46785039 tgccagtattgtttgaagaagatgcattggaaaccatccggaccaggagatttgtagggtttcatggagttgagggc 46785115  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 3881286 - 3881228
Alignment:
Q  29 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagtt 87  Q
    |||||||||||||| ||||||||||| ||| | || ||||| |||||||||||||||||    
T  3881286 ttgaagaagatgcaatggaaaccatccgggccaggagctttataaggtttcatggagtt 3881228  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 48846514 - 48846453
Alignment:
Q  32 aagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggc 93  Q
    |||||||| ||||| || ||||||||  | || |||||||||||||||||||||| ||||||    
T  48846514 aagaagatacattgaaacccatcaggaccaggggctttgtaaggtttcatggagtgaagggc 48846453  T

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