View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_33 (Length: 321)
Name: NF1500_low_33
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 9883693 - 9883997
Alignment:
| Q |
1 |
agaaatttctgaagaagaagcttcactgagaaaccttgtggattcccttaagacagaattagaacaagtgaagaaagaacaagaggagcttaaggagaag |
100 |
Q |
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| T |
9883693 |
agaaatttctgaagaagaagcttcactgagaaaccttgtggattcccttaagacagaattagaacaagtgaagaaagaacaagaggagcttaaggagaag |
9883792 |
T |
|
| Q |
101 |
gaacaagcagcggaagctcttgctgcaaacctaactggcgaactacaaggtagcaaagaagaggaaaattctatggaaaacaaagaatctaatgagagtc |
200 |
Q |
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| T |
9883793 |
gaacaagcagcggaagctcttgctgcaaacctaactggcgaactacaaggtagcaaagaagaggaaaattctatggaaaacaaagaatctaatgagagtc |
9883892 |
T |
|
| Q |
201 |
attgtcaagaaatagaattgaaaatcaagcagttatcattcgagacagaaaatgcaagnnnnnnngaagaagagatgagaatgaaagctcaggaactgaa |
300 |
Q |
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| T |
9883893 |
attgtcaagaaatagaattgaaaatcaagcagttatcattcgagacagaaaatgcaagaaaagaagaagaagagatgagaatgaaagctcaggaactgaa |
9883992 |
T |
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| Q |
301 |
acaag |
305 |
Q |
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| T |
9883993 |
acaag |
9883997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 55825727 - 55825650
Alignment:
| Q |
47 |
cttaagacagaattagaacaagtgaagaaagaacaagaggagcttaaggagaaggaacaagcagcggaagctcttgct |
124 |
Q |
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| T |
55825727 |
cttaggacagaattgaaacaagtgaagaaagagcaagatgaacttaaggataagaaacaagcagcagaagttcttgct |
55825650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 56149254 - 56149331
Alignment:
| Q |
47 |
cttaagacagaattagaacaagtgaagaaagaacaagaggagcttaaggagaaggaacaagcagcggaagctcttgct |
124 |
Q |
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|||| ||||||||| |||||||||||||||| ||||| || |||||||| ||| |||||||||| |||| ||||||| |
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| T |
56149254 |
cttaggacagaattgaaacaagtgaagaaagagcaagatgaacttaaggataagaaacaagcagcagaagttcttgct |
56149331 |
T |
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