View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1500_low_34 (Length: 320)
Name: NF1500_low_34
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 6386210 - 6386490
Alignment:
| Q |
11 |
cataggagagtattggtcatcctatttactatttttcaaaatatcaaactagtaattttcttttatagagttcaactttgatacaccgaaaatgaattct |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6386210 |
cataggagagtattggccatcctatttactatttttcaaaatatcaaact-------------tttagagttcaactttgatacaccgaaaatgaattct |
6386296 |
T |
|
| Q |
111 |
---ggtagatcacaatcaattatgtgtgatgttagatgtgattaagtcattcgttttcaacaatcttacgaatatgtttgattatataaatattcgttaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6386297 |
cttggtagatcacaatcaattatgtgtgatgttagatgtgattaagtcattcgttttcaacaatcttacgaatatgtttgattatataaatattcgttaa |
6386396 |
T |
|
| Q |
208 |
tgaatttaaattaaatgtattaagttttcaacttgtacgtattgacattgtataacttttttacacatgcatcaactaaatcacaccaccatat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6386397 |
tgaatttaaattaaatgtattaagttttcaacttgtgcgtattgatattgtataacttttttacacatgcatcaattaaatcacaccaccatat |
6386490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University