View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_35 (Length: 315)

Name: NF1500_low_35
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_35
NF1500_low_35
[»] chr8 (3 HSPs)
chr8 (13-305)||(24985519-24985809)
chr8 (161-280)||(23273531-23273650)
chr8 (161-280)||(23410612-23410731)
[»] chr6 (4 HSPs)
chr6 (182-281)||(34800492-34800591)
chr6 (182-300)||(34776541-34776659)
chr6 (172-302)||(2563769-2563899)
chr6 (28-71)||(34800669-34800712)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 24985519 - 24985809
Alignment:
Q  13 gggtttagtaagcactgattttaagaagtatttgtgtaacattgttaggtcagtcaagttcaactgaagagataaagaaaacaaaggtgtatcgaagatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  24985519 gggtttagtaagcactgattttaagaagtatttgtgtaacattgttaggtcagtcaagttcaactgaaga--taaagaaaacaaaggtgtatcgaagatg 24985616  T
Q  113 gagagacaaaagaaaagtgaaatgcatataaacgacgatgacacaaatgacacaaacaaactcattgacctgcctgaccatctgcttttgcatataattg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24985617 gagagacaaaagaaaagtgaaatgcatataaacgacgatgacacaaatgacacaaacaaactcagtgacctgcctgaccatctgcttttgcatataattg 24985716  T
Q  213 aatttatgaacagtaaacaatctgttcagacatgcgtcttgtctaaacgatggaaggacctttggaaaaagcgcactagtctcaagtttcttc 305  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  24985717 aatttatgaacactaaacaatctgttcagacatgcgtcttgtctaaacgatggaaggacctttggaaaaatcgcactaatctcaagtttcttc 24985809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 23273650 - 23273531
Alignment:
Q  161 gacacaaacaaactcattgacctgcctgaccatctgcttttgcatataattgaatttatgaacagtaaacaatctgttcagacatgcgtcttgtctaaac 260  Q
    |||||| ||| ||||| |||||| ||||||||| | ||| | ||||| ||||||||||||||||  ||||||||||||||||| |||||  |||||||||    
T  23273650 gacacagacagactcagtgaccttcctgaccatgtccttcttcatatcattgaatttatgaacataaaacaatctgttcagacttgcgttctgtctaaac 23273551  T
Q  261 gatggaaggacctttggaaa 280  Q
    |||||||| |||||||||||    
T  23273550 gatggaagaacctttggaaa 23273531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 23410612 - 23410731
Alignment:
Q  161 gacacaaacaaactcattgacctgcctgaccatctgcttttgcatataattgaatttatgaacagtaaacaatctgttcagacatgcgtcttgtctaaac 260  Q
    |||||| ||| ||||| |||||| ||||||||| | ||| | ||||| ||||||| ||||||||  ||||||||||||||||| |||||  |||||||||    
T  23410612 gacacagacagactcagtgaccttcctgaccatgtccttcttcatatcattgaatctatgaacataaaacaatctgttcagacctgcgttctgtctaaac 23410711  T
Q  261 gatggaaggacctttggaaa 280  Q
    ||||||||||||||||||||    
T  23410712 gatggaaggacctttggaaa 23410731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 34800591 - 34800492
Alignment:
Q  182 ctgcctgaccatctgcttttgcatataattgaatttatgaacagtaaacaatctgttcagacatgcgtcttgtctaaacgatggaaggacctttggaaaa 281  Q
    |||||||||||| | ||| |||||||||||||||||||||| |  || |||||||||||||| || || ||||||||||||||||||  |||||||||||    
T  34800591 ctgcctgaccatgtccttctgcatataattgaatttatgaatataaagcaatctgttcagacttgtgttttgtctaaacgatggaagagcctttggaaaa 34800492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 300
Target Start/End: Complemental strand, 34776659 - 34776541
Alignment:
Q  182 ctgcctgaccatctgcttttgcatataattgaatttatgaacagtaaacaatctgttcagacatgcgtcttgtctaaacgatggaaggacctttggaaaa 281  Q
    |||||||||||| | ||| |||||||||||||||||||||| |  | ||||||||||| ||| || || |||||||||||||||||| || |||||||||    
T  34776659 ctgcctgaccatgtccttctgcatataattgaatttatgaatataagacaatctgttcggacttgtgttttgtctaaacgatggaagaacgtttggaaaa 34776560  T
Q  282 agcgcactagtctcaagtt 300  Q
      | ||||| |||||||||    
T  34776559 gtctcactaatctcaagtt 34776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 302
Target Start/End: Complemental strand, 2563899 - 2563769
Alignment:
Q  172 actcattgacctgcctgaccatctgcttttgcatataattgaatttatgaacagtaaacaatctgttcagacatgcgtcttgtctaaacgatggaaggac 271  Q
    ||||| ||| |||||  ||||||| ||| |||||||| |||||||||||||||  |||   ||| ||||||| || || ||||||||||| |||||||||    
T  2563899 actcagtgatctgccgaaccatcttcttctgcatatatttgaatttatgaacataaaatgttctattcagacttgtgttttgtctaaacgttggaaggac 2563800  T
Q  272 ctttggaaaaagcgcactagtctcaagtttc 302  Q
    ||||||||||  | ||||| ||||| |||||    
T  2563799 ctttggaaaagtctcactaatctcacgtttc 2563769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 34800712 - 34800669
Alignment:
Q  28 tgattttaagaagtatttgtgtaacattgttaggtcagtcaagt 71  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  34800712 tgattttaagaagtatttgtgtaactttgttaggtcagtcaagt 34800669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University