View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_37 (Length: 301)
Name: NF1500_low_37
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 40780817 - 40780531
Alignment:
| Q |
1 |
attatagaaaaatttatttaaagatgtaattggaataataaaatagccgtcacaatctcatatttcatttctc---atgtgagactcttaacatctcctt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
40780817 |
attatagaaaaatttatttaaagatgtaattggaataataaaatagccgtcacaatctcatatttcacttcttcttatgtgagactcttaacatctcctt |
40780718 |
T |
|
| Q |
98 |
cacaaccaagattatgacgtgtgaacctaacaacaaatgtctctatagatattgaatagactctaacacaactccttaacaaaacttacttgtaagatga |
197 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40780717 |
cacaaccaagattatgacgtgtgaatctaacaacaaatgtctctccagatattgaatagactctaacacaactccttaacaaaacttacttgtaagatga |
40780618 |
T |
|
| Q |
198 |
tggcttctcccatttgtaaatannnnnnnnggtggtagttggggtttgaacttcaaagtctttatatatattatgcattgttcatac |
284 |
Q |
| |
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|||||||||||||||||||||| |||| | || |||||||||||| ||| | || |||||||||| |||||||||||| |
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| T |
40780617 |
tggcttctcccatttgtaaatactttttttggtgatggtcggggtttgaactccaacattcttgtatatattatacattgttcatac |
40780531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32639973 - 32640011
Alignment:
| Q |
1 |
attatagaaaaatttatttaaagatgtaattggaataat |
39 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
32639973 |
attatagaaaaatttatttaaagatgtaatttgaataat |
32640011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5357370 - 5357328
Alignment:
| Q |
1 |
attatagaaaaatttatttaaagatgtaattggaataataaaa |
43 |
Q |
| |
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|||||||||||| |||||||| ||| ||||||||||||||||| |
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|
| T |
5357370 |
attatagaaaaaattatttaaggatataattggaataataaaa |
5357328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33133716 - 33133753
Alignment:
| Q |
1 |
attatagaaaaatttatttaaagatgtaattggaataa |
38 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||||| |
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| T |
33133716 |
attatagaaaaatttatttaaggatataattggaataa |
33133753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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