View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_38 (Length: 300)
Name: NF1500_low_38
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_38 |
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| [»] scaffold1325 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 44804087 - 44803831
Alignment:
| Q |
32 |
ctttcaactttttacatgatgtattttttgttagcgatattaaatagataattagaggaataggatattaatcttttactggttttttgtattagatttg |
131 |
Q |
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| T |
44804087 |
ctttcaactttttacatgatgtattttttgttagcgatattaaatagataattagaggaataggatattaatcttttactggttttttgtattagatttg |
44803988 |
T |
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| Q |
132 |
tgtgatgggagatatcataacaacagttttgtttaattccctgttgcttatgcatggtaggaggagattgagattgatgctagggttctacgagtaggaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44803987 |
tgtgatgggagatatcataacaacagttttgtttaattccctgttgcttatgcatggtaggaggagattgagattgatgctagggttctacgagtaggaa |
44803888 |
T |
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| Q |
232 |
aggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
288 |
Q |
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| T |
44803887 |
aggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
44803831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 67 - 288
Target Start/End: Complemental strand, 44800206 - 44799982
Alignment:
| Q |
67 |
gatattaaatagataattagaggaataggatattaatcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagtt------t |
160 |
Q |
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| T |
44800206 |
gatatcaaattgataattagaggaatatgatatt---cttttcctggttttttttattaaatttgtgtgatga-agatatcacaaaaatagttctttctt |
44800111 |
T |
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| Q |
161 |
tgtttaattccctgttgcttatgca-tggtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagtt |
259 |
Q |
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| T |
44800110 |
tgtttaattccctatggcttatgcaatggtaggaggagattgagattgataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagtt |
44800011 |
T |
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| Q |
260 |
gaggaagaaaaagacggaccaagtttttg |
288 |
Q |
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| T |
44800010 |
caggaagaaaaagacgggccaaatttttg |
44799982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 44797022 - 44796923
Alignment:
| Q |
189 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
288 |
Q |
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| T |
44797022 |
taggaggagattgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttg |
44796923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 103 - 288
Target Start/End: Complemental strand, 44783894 - 44783709
Alignment:
| Q |
103 |
tcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagttt-tgtttaattccctgttgcttatgcatggtaggaggagattg |
201 |
Q |
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|||||| ||||||| | |||||||||||||| ||| |||||||| ||||| |||| | ||||| ||| | | ||||||| || ||||| ||||||| |
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| T |
44783894 |
tcttttcctggtttcatatattagatttgtgtaatga-agatatcacaacaatagttaatttttaactccatatggcttatgtttgataggaagagattg |
44783796 |
T |
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| Q |
202 |
agattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
288 |
Q |
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| T |
44783795 |
agatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttg |
44783709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 288
Target Start/End: Complemental strand, 44792121 - 44792028
Alignment:
| Q |
195 |
gagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
288 |
Q |
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|||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||| | |||||||||||| | |||||||||| |
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| T |
44792121 |
gagattgagattgatgctagagttttacgaataggaaaggctgtagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttg |
44792028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 288
Target Start/End: Complemental strand, 44788440 - 44788340
Alignment:
| Q |
188 |
gtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagttttt |
287 |
Q |
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|||||||||||||||||| ||||||| |||||||||| ||| |||| | |||||||||||||||||||| |||||||||||||| | |||| ||||| |
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| T |
44788440 |
gtaggaggagattgagatcgatgctaaagttctacgagcagggaagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaattttt |
44788341 |
T |
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| Q |
288 |
g |
288 |
Q |
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| T |
44788340 |
g |
44788340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 44786761 - 44786662
Alignment:
| Q |
189 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
288 |
Q |
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||||||||||||||||| |||| || || ||||||||||||||| | |||||||| ||||||||||||| ||||||||||| || | |||| |||||| |
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| T |
44786761 |
taggaggagattgagatcgatggcagagtcctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaaactggccaaatttttg |
44786662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1325 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1325
Description:
Target: scaffold1325; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 1828 - 2006
Alignment:
| Q |
67 |
gatattaaatagataattagaggaataggatattaatcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagtt------t |
160 |
Q |
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||||| |||| ||||||||||||||| ||||||| ||||| | |||||||||||||| |||||||||||| |||||||| | | |||| | |
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| T |
1828 |
gatatcaaattgataattagaggaatgggatatt---cttttcccggttttttgtattaaatttgtgtgatga-agatatcacgaacatagttatttttt |
1923 |
T |
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| Q |
161 |
tgtttaattccctgttgcttatgca-tggtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagct |
242 |
Q |
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||||||||||||| | ||||||| | ||||||||||||||| |||||||| | | ||||||| ||||||||||||| |||||| |
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| T |
1924 |
tgtttaattccctatggcttatgtaatggtaggaggagattcagattgataccaaggttctatgagtaggaaaggctgtagct |
2006 |
T |
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