View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_39 (Length: 295)

Name: NF1500_low_39
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_39
NF1500_low_39
[»] chr8 (11 HSPs)
chr8 (65-279)||(42829468-42829681)
chr8 (72-140)||(2554212-2554280)
chr8 (78-129)||(32421573-32421624)
chr8 (75-129)||(10152460-10152514)
chr8 (88-129)||(10982730-10982771)
chr8 (88-129)||(17898083-17898124)
chr8 (69-129)||(35916639-35916700)
chr8 (75-140)||(37872177-37872242)
chr8 (78-127)||(43778025-43778074)
chr8 (75-127)||(14279574-14279626)
chr8 (89-129)||(44224213-44224253)
[»] chr7 (4 HSPs)
chr7 (66-129)||(24839492-24839555)
chr7 (66-130)||(45979116-45979180)
chr7 (66-129)||(8261437-8261500)
chr7 (75-129)||(36428152-36428205)
[»] chr5 (5 HSPs)
chr5 (70-129)||(36105180-36105239)
chr5 (78-128)||(40837909-40837959)
chr5 (75-129)||(781867-781921)
chr5 (71-129)||(17145347-17145405)
chr5 (71-129)||(35109404-35109462)
[»] chr1 (8 HSPs)
chr1 (70-129)||(16580797-16580856)
chr1 (71-129)||(11410631-11410689)
chr1 (70-123)||(29233972-29234025)
chr1 (88-129)||(37013992-37014033)
chr1 (66-140)||(25086476-25086550)
chr1 (75-129)||(34766864-34766918)
chr1 (88-129)||(1603677-1603718)
chr1 (89-129)||(27172739-27172779)
[»] chr4 (6 HSPs)
chr4 (72-129)||(51002291-51002348)
chr4 (75-129)||(32180834-32180888)
chr4 (65-127)||(36662362-36662424)
chr4 (66-139)||(6087741-6087814)
chr4 (88-129)||(7030909-7030950)
chr4 (88-129)||(24885816-24885857)
[»] chr3 (5 HSPs)
chr3 (65-126)||(52089323-52089384)
chr3 (66-139)||(53996293-53996366)
chr3 (71-129)||(52575951-52576009)
chr3 (88-128)||(7300777-7300817)
chr3 (75-127)||(7824813-7824865)
[»] scaffold0086 (1 HSPs)
scaffold0086 (89-129)||(19072-19112)
[»] chr2 (4 HSPs)
chr2 (66-129)||(2256975-2257038)
chr2 (75-129)||(12599868-12599922)
chr2 (75-129)||(42475113-42475167)
chr2 (78-127)||(41859858-41859907)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 65 - 279
Target Start/End: Original strand, 42829468 - 42829681
Alignment:
Q  65 atggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagccgacaaggactcttattataatgaaataactagcc 164  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||| ||||    
T  42829468 atggccggggttcgaaccccagaccttgcatattttatattttgtccataccaactgagctaagcccacaaagactcttattataatgaaataaccagcc 42829567  T
Q  165 taattccaaaaaattaatttagttatttattatgggcgtgtttgtaatttctacccgactttatcagtctttttagcccccaaaatattaaattggcgtg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42829568 taattccaaaaaattaatttagttatttattatgggcgtgtttgtaatttctacccgactttatcagtctttttag-ccccaaaatattaaattggcgtg 42829666  T
Q  265 tccatttgtctttaa 279  Q
    |||||||||||||||    
T  42829667 tccatttgtctttaa 42829681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 2554212 - 2554280
Alignment:
Q  72 ggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagccgacaaggact 140  Q
    ||||||||||||||| ||||||||||||||| | ||||| ||| |||||||| |||||  |||||||||    
T  2554212 ggattcgaaccccagaccttgcatattttatgtattgtccatatcaactgagctaagctcacaaggact 2554280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 32421624 - 32421573
Alignment:
Q  78 gaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    ||||||| | |||||||||| |||||| ||||| ||||||||||||||||||    
T  32421624 gaaccccggaccttgcatatattatatattgtccataccaactgagttaagc 32421573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 10152514 - 10152460
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||| ||  ||||||||||||||||  |||||||||||||||||| |||||    
T  10152514 ttcgaacctcaaaccttgcatattttatacattgtctataccaactgagctaagc 10152460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 10982771 - 10982730
Alignment:
Q  88 ccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||| |||||| ||||| ||||||||||||||||||    
T  10982771 ccttgcatatattatatattgtccataccaactgagttaagc 10982730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 17898124 - 17898083
Alignment:
Q  88 ccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||| |||| ||||||| ||||||||||||||||||    
T  17898124 ccttgcatatattatgttttgtccataccaactgagttaagc 17898083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 35916639 - 35916700
Alignment:
Q  69 ctgggattcgaaccccaggccttgcatat-tttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||||||  | |||||||||| ||||||| ||||||||| |||||||| |||||    
T  35916639 ctgggattcgaacccgcgaccttgcatatatttatatattgtctatatcaactgagctaagc 35916700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 37872242 - 37872177
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagccgacaaggact 140  Q
    |||||||||||  ||||||||||||||| | ||||||||| ||| |||| |||||  |||||||||    
T  37872242 ttcgaaccccaaaccttgcatattttatgtattgtctatagcaattgagctaagctcacaaggact 37872177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 43778074 - 43778025
Alignment:
Q  78 gaaccccaggccttgcatattttatattttgtctataccaactgagttaa 127  Q
    ||||| ||| |||||||||||||||   ||||||||||||||||||||||    
T  43778074 gaacctcagaccttgcatattttatgcattgtctataccaactgagttaa 43778025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 14279574 - 14279626
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaa 127  Q
    ||||||||||   |||||||||||||||   ||||||||||||||||||||||    
T  14279574 ttcgaaccccgaaccttgcatattttatgcattgtctataccaactgagttaa 14279626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 44224213 - 44224253
Alignment:
Q  89 cttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||||||| || |||||||||| ||||||||||    
T  44224213 cttgcatattttatatattatctataccaattgagttaagc 44224253  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 24839555 - 24839492
Alignment:
Q  66 tggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    ||||||||  ||||||||||| |||| ||||||||||   ||||||||||||||||||||||||    
T  24839555 tggctggggatcgaaccccagaccttacatattttatgcattgtctataccaactgagttaagc 24839492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 45979180 - 45979116
Alignment:
Q  66 tggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagcc 130  Q
    ||||| ||||||||||||||| |||||||||| |||| | |||||| || ||| |||||||||||    
T  45979180 tggcttggattcgaaccccagaccttgcatatattatgtattgtctttatcaaatgagttaagcc 45979116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 8261437 - 8261500
Alignment:
Q  66 tggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||| |||||||||||||||  |||| ||||||||||   ||||||||||||||||| ||||||    
T  8261437 tggccgggattcgaaccccaaaccttacatattttatgcattgtctataccaactgacttaagc 8261500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 36428205 - 36428152
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||| | ||||||||||||||||  ||||| ||||||||||||||||||    
T  36428205 ttcgaacccc-gaccttgcatattttatacattgtccataccaactgagttaagc 36428152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 36105239 - 36105180
Alignment:
Q  70 tgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||| |||||||| |||||||| | ||||| ||||||| |||||||||||||||||    
T  36105239 tgggattcaaaccccagaccttgcatgtattatactttgtctctaccaactgagttaagc 36105180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 40837909 - 40837959
Alignment:
Q  78 gaaccccaggccttgcatattttatattttgtctataccaactgagttaag 128  Q
    ||||||| | ||||||||||||||||| ||||| |||||||||||||||||    
T  40837909 gaaccccggaccttgcatattttatatattgtccataccaactgagttaag 40837959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 781921 - 781867
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||| ||||||||||||||||  |||||  || ||||||||||||||    
T  781921 ttcgaaccccagaccttgcatattttatacattgtccctatcaactgagttaagc 781867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 17145347 - 17145405
Alignment:
Q  71 gggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||| |||  ||||||||| |||||  |||||| |||||||||||||||||    
T  17145347 gggattcgaacctcagatcttgcatatattatacattgtctttaccaactgagttaagc 17145405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 35109462 - 35109404
Alignment:
Q  71 gggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||| | | |||||||||| |||| | |||||| |||||||||||||||||    
T  35109462 gggattcgaacctcggaccttgcatatattatgtattgtctttaccaactgagttaagc 35109404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 16580797 - 16580856
Alignment:
Q  70 tgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    ||||||||||||||||| |||||||||| |||||  ||||| ||||||||||| ||||||    
T  16580797 tgggattcgaaccccagaccttgcatatattatacattgtccataccaactgaattaagc 16580856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 11410689 - 11410631
Alignment:
Q  71 gggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||||||| |||| |||||||||| | ||||  ||||||||||||||||||    
T  11410689 gggattcgaaccccagaccttacatattttatgtattgttcataccaactgagttaagc 11410631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 29233972 - 29234025
Alignment:
Q  70 tgggattcgaaccccaggccttgcatattttatattttgtctataccaactgag 123  Q
    |||| |||||||||||| |||||||||||||||   ||||||||||||||||||    
T  29233972 tggggttcgaaccccagaccttgcatattttatgcattgtctataccaactgag 29234025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 37014033 - 37013992
Alignment:
Q  88 ccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  37014033 ccttgcatattttatattttgtccctaccaactgagttaagc 37013992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 25086550 - 25086476
Alignment:
Q  66 tggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagccgacaaggact 140  Q
    ||||| ||||| |||||| || |||||||||||||||   ||||| |||||||||||| |||||  |||||||||    
T  25086550 tggctaggatttgaaccctagaccttgcatattttatgcattgtccataccaactgagctaagctcacaaggact 25086476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 34766918 - 34766864
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||||||||||||||    
T  34766918 ttcgaaccccagaccttgcatgtattatacattgtccataccaactgagttaagc 34766864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 1603718 - 1603677
Alignment:
Q  88 ccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||| |||||||||||| ||||||||| ||||||||||||||    
T  1603718 ccttacatattttatatattgtctatatcaactgagttaagc 1603677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 27172739 - 27172779
Alignment:
Q  89 cttgcatattttatattttgtctataccaactgagttaagc 129  Q
    ||||||||| |||| ||||||| ||||||||||||||||||    
T  27172739 cttgcatatattatgttttgtccataccaactgagttaagc 27172779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 51002348 - 51002291
Alignment:
Q  72 ggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    ||||||||||| ||  |||||||||||||||   ||||||||||||||||||||||||    
T  51002348 ggattcgaacctcaaaccttgcatattttatgcattgtctataccaactgagttaagc 51002291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 32180888 - 32180834
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||| | |||||||||||||   |||||||||||||||||| |||||    
T  32180888 ttcgaaccccagactttgcatattttatgcattgtctataccaactgagctaagc 32180834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 36662362 - 36662424
Alignment:
Q  65 atggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaa 127  Q
    ||||| ||| |||||||||| | ||||| |||||||||   ||||||||||||||||||||||    
T  36662362 atggccggggttcgaacccctgaccttgtatattttatgcattgtctataccaactgagttaa 36662424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 6087814 - 6087741
Alignment:
Q  66 tggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagccgacaaggac 139  Q
    |||||||| || ||||||||| |||||||||| ||||   || ||||||||||||||| |||||  ||||||||    
T  6087814 tggctggggtttgaaccccagaccttgcatatattatgcattatctataccaactgagctaagctcacaaggac 6087741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 7030909 - 7030950
Alignment:
Q  88 ccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||||||   ||||||||||||||||||||||||    
T  7030909 ccttgcatattttatgcattgtctataccaactgagttaagc 7030950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 24885816 - 24885857
Alignment:
Q  88 ccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    ||||||||||||||| | ||||| ||||||||||||||||||    
T  24885816 ccttgcatattttatgtattgtccataccaactgagttaagc 24885857  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 52089384 - 52089323
Alignment:
Q  65 atggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagtta 126  Q
    ||||| ||| |||||||||||  |||||||||| |||||| |||||| ||||||||||||||    
T  52089384 atggccggggttcgaaccccaaaccttgcatatattatatattgtctctaccaactgagtta 52089323  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 53996366 - 53996293
Alignment:
Q  66 tggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagccgacaaggac 139  Q
    |||| |||||||||||||||| |||||||||| ||||   ||||| |||||||||||| |||||  ||||||||    
T  53996366 tggccgggattcgaaccccagaccttgcatatattatgcattgtccataccaactgagctaagctcacaaggac 53996293  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 52576009 - 52575951
Alignment:
Q  71 gggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||||||| |||||||||||||||   ||||  |||||||||||| |||||    
T  52576009 gggattcgaaccccagaccttgcatattttatgcattgttcataccaactgagctaagc 52575951  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 7300817 - 7300777
Alignment:
Q  88 ccttgcatattttatattttgtctataccaactgagttaag 128  Q
    |||||||||| |||| |||||||||||| ||||||||||||    
T  7300817 ccttgcatatattatgttttgtctatactaactgagttaag 7300777  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 7824865 - 7824813
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaa 127  Q
    ||||||| |||| |||||||||| |||| | ||||||||| ||||||||||||    
T  7824865 ttcgaactccagaccttgcatatattatgtattgtctatatcaactgagttaa 7824813  T

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Target: scaffold0086 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 19072 - 19112
Alignment:
Q  89 cttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  19072 cttgcatattttatatattgtttataccaactgagttaagc 19112  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 2257038 - 2256975
Alignment:
Q  66 tggctgggattcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||| ||| |||||||||||| |||||||||| ||||   ||||| ||||||||||||||||||    
T  2257038 tggccggggttcgaaccccagaccttgcatatattatgcattgtccataccaactgagttaagc 2256975  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 12599868 - 12599922
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||||||| |||||||||| |||| | ||||| |||| |||||||||||||    
T  12599868 ttcgaaccccagaccttgcatatattatgtattgtccatactaactgagttaagc 12599922  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 42475113 - 42475167
Alignment:
Q  75 ttcgaaccccaggccttgcatattttatattttgtctataccaactgagttaagc 129  Q
    |||||||| ||| |||||||||||||||   |||| |||||||||||||||||||    
T  42475113 ttcgaacctcagaccttgcatattttatgcattgtttataccaactgagttaagc 42475167  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 41859907 - 41859858
Alignment:
Q  78 gaaccccaggccttgcatattttatattttgtctataccaactgagttaa 127  Q
    ||||||||| |||||||||||||||   ||||| ||||||||||||||||    
T  41859907 gaaccccagaccttgcatattttatgcattgtccataccaactgagttaa 41859858  T

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