View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1500_low_4 (Length: 592)
Name: NF1500_low_4
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 21 - 587
Target Start/End: Complemental strand, 38443343 - 38442780
Alignment:
| Q |
21 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
120 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38443343 |
ggaaaccatgaatgaggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacga |
38443244 |
T |
|
| Q |
121 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443243 |
cgatgatcatgaagagcagtaagcctaggttggatttctccaccataagtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtat |
38443144 |
T |
|
| Q |
221 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggaccttctgnnnnnnnaaccatgtgaattgtgagatattcaaatttatatgtatt |
320 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
38443143 |
tgagaatgaaaagagggttcgagaaaagacggatgaaactgttgggaccttctctttttttaactatgtgaattgtgagatattcaaatttatatgta-t |
38443045 |
T |
|
| Q |
321 |
ttcattaactgaatttccaacatattaggggggaatgaaagagagttttaaataaataaactatggcaaatatagtttgactaaccgaattttccaaata |
420 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
38443044 |
ttcattaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggc-aatatagttggacttaccgaattttccaaata |
38442946 |
T |
|
| Q |
421 |
ctatgggaatgtgaaaattcttatccatgttgtttgttaacttttcacgtgaannnnnnnngataagccatgtaacttatcccatgccatttatataagg |
520 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
38442945 |
ctatgggaatgtgaaaattcttat-catgttgtttgttaacttttcacgtgaattttttttgataagccatttaacttatcccatcccatttatataagg |
38442847 |
T |
|
| Q |
521 |
catataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaaccctttgctact |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38442846 |
catataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaaccctttgatact |
38442780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 38182841 - 38183083
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38182841 |
cggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacg |
38182940 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38182941 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggta |
38183040 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183041 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38183083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 38188290 - 38188048
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38188290 |
cggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacg |
38188191 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188190 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggta |
38188091 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188090 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38188048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 38210067 - 38210309
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38210067 |
cggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacg |
38210166 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210167 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggta |
38210266 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210267 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38210309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 38169759 - 38169517
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38169759 |
cggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacg |
38169660 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38169659 |
aagatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggta |
38169560 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
262 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38169559 |
ctgagagtgtaaagagggttcgagaaaagacgggtgaaactgt |
38169517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 38215515 - 38215274
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38215515 |
cggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacg |
38215416 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215415 |
acgatgatcatgaagagcagtaagcctaggttgga-ttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggta |
38215317 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
262 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38215316 |
ctgagagtgaaaagagggttcaagaaaagacgggtgaaactgt |
38215274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 38183439 - 38183191
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38183439 |
cggaaaacatgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcgacgatgatgattttattgtctccaccgatgtaggaataacg |
38183340 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183339 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggta |
38183240 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
38183239 |
ctgagagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac |
38183191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 38214918 - 38215166
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38214918 |
cggaaaacatgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcgacgatgatgattttattgtctccaccgatgtaggaataacg |
38215017 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215018 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggta |
38215117 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
38215118 |
ctgagagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac |
38215166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 38185548 - 38185300
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38185548 |
cggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacg |
38185449 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38185448 |
acgatgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggta |
38185349 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
268 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||| |||||||| |
|
|
| T |
38185348 |
ctgagagtgaaaataggattcgagaaaagacgtctgaaacagttgggac |
38185300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 38212809 - 38213057
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38212809 |
cggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacg |
38212908 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38212909 |
acgatgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggta |
38213008 |
T |
|
| Q |
220 |
ctgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
268 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||| |||||||| |
|
|
| T |
38213009 |
ctgagagtgaaaataggattcgagaaaagacgtctgaaacagttgggac |
38213057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 45 - 262
Target Start/End: Original strand, 38197370 - 38197587
Alignment:
| Q |
45 |
tgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacgatgatcatgaagagcagtaagc |
144 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
38197370 |
tgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgaagatgatcatgaagagcagtaagc |
38197469 |
T |
|
| Q |
145 |
ctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgaga |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
38197470 |
ctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtactgagagtgtaaagagggttcgaga |
38197569 |
T |
|
| Q |
245 |
aaagacgggtgaaactgt |
262 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38197570 |
aaagacgggtgaaactgt |
38197587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 38453151 - 38453380
Alignment:
| Q |
20 |
cggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccg |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38453151 |
cggaaaacatgaatatggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacg |
38453250 |
T |
|
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggta |
219 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38453251 |
acgatgatcatgaagagaagtaagccttggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaa--gttttgagagggta |
38453348 |
T |
|
| Q |
220 |
ctg----agagtgaaaagagggttcgagaaaa |
247 |
Q |
| |
|
| | ||| |||||||||| |||||||||| |
|
|
| T |
38453349 |
ccgaccaagattgaaaagaggattcgagaaaa |
38453380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 38452129 - 38452167
Alignment:
| Q |
120 |
acgatgatcatgaagagcagtaagcctaggttggatttt |
158 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
38452129 |
acgatgaacatgaagagcagtaagtctaggttggatttt |
38452167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 513 - 577
Target Start/End: Original strand, 53352659 - 53352723
Alignment:
| Q |
513 |
atataaggcatataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaacc |
577 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||||| |||||||||||||| |||||| |
|
|
| T |
53352659 |
atataaggcatataacttatcccaattatattaccatgtatatcgcacaaacctaccttcaaacc |
53352723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University