View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_41 (Length: 291)
Name: NF1500_low_41
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 29176298 - 29176568
Alignment:
| Q |
11 |
caacaacaacagcaactcgcggcaatgattctttggactctatggaagaatcgtaactccaaactttgggaaaatgtcgatcaaccaccgtctttcatgg |
110 |
Q |
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| T |
29176298 |
caacaacaacagcaactcgcggcaatgattctttggactctatggaagaatcgtaactccaaactttgggagaatgtcgatcaaccaccgcctttcatgg |
29176397 |
T |
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| Q |
111 |
tcaaacgcgcactagattcactcaatgaatgtcattttatgcagagagttaggaaactcggtcaaccaccgcaaatagcatattcatggacaaagccttc |
210 |
Q |
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| T |
29176398 |
tcaaacacgcactagattcactcaatgaatgtcattttatgcaaagagttgggaaactcggtcaaccaccgcaaatagcatattcatggacaaagccttc |
29176497 |
T |
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| Q |
211 |
atttgcaactctcaagtgcaatgatgattgtgccctctttaataatagttccgttacaggttatgacatat |
281 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29176498 |
atttgcaactctaaagtgcaatgatgattgtgccctctttaataatagttccgttacaggttatgacatat |
29176568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 11254722 - 11254992
Alignment:
| Q |
11 |
caacaacaacagcaactcgcggcaatgattctttggactctatggaagaatcgtaactccaaactttgggaaaatgtcgatcaaccaccgtctttcatgg |
110 |
Q |
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| T |
11254722 |
caacaacaacagcaactcgcgacaatgattctttggactctatggaagaatcgtaactccatactttgggagaatgtcgatcagccaccgtctttcatgg |
11254821 |
T |
|
| Q |
111 |
tcaaacgcgcactagattcactcaatgaatgtcattttatgcagagagttaggaaactcggtcaaccaccgcaaatagcatattcatggacaaagccttc |
210 |
Q |
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| T |
11254822 |
tcaaacacgcactagattcactcaatgaatgacagtttatgcagagggctgggaaactcgatcaaccaccacaaacaacatattcatggacaaagcctcc |
11254921 |
T |
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| Q |
211 |
atttgcaactctcaagtgcaatgatgattgtgccctctttaataatagttccgttacaggttatgacatat |
281 |
Q |
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| T |
11254922 |
atctgcaactctaaagtgcaatgttgattgtgccctctttcataatagttccattacaggttatggcatat |
11254992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 46 - 260
Target Start/End: Complemental strand, 36937519 - 36937307
Alignment:
| Q |
46 |
gactctatggaagaatcgtaactccaaactttgggaaaatgtcgatcaaccaccgtctttcatggtcaaacgcgcactagattcactcaatgaatgtcat |
145 |
Q |
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| T |
36937519 |
gactctacggaagaatcgtaactccaaactttgggagaatttcgatcagccaccgtcttttatggtcaaatgcgcactagagtcactcaatgaatggcaa |
36937420 |
T |
|
| Q |
146 |
tttatgcagagagttaggaaactcggtcaaccaccgcaaatagcatattcatggacaaagccttcatttgcaactctcaagtgcaatgatgattgtgccc |
245 |
Q |
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| T |
36937419 |
tgtatgcatagagttaggaaa--cggtcaatcatcgcaaacaacatattcatggacaaagcctccatttgcaactctaaagtgcaatgttgattgcgcct |
36937322 |
T |
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| Q |
246 |
tctttaataatagtt |
260 |
Q |
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| T |
36937321 |
tctttaataatagtt |
36937307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 30840466 - 30840616
Alignment:
| Q |
17 |
caacagcaactcgcggcaatgattctttggactctatggaagaatcgtaactccaaactttgggaaaatgtcgatcaaccaccgtctttcatggtcaaac |
116 |
Q |
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||||||||||| | ||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||| | |
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| T |
30840466 |
caacagcaacttgtggcaatgattctttggagtctttggaagaatcgcaactccaaactttgggagaatgtcgatcaaccaccatctatcatggtcagat |
30840565 |
T |
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| Q |
117 |
gcgcactagattcactcaatgaatgtcattttatgcagagagttaggaaac |
167 |
Q |
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| T |
30840566 |
gcgcatgagagtcacttcacgaatggcagtttatgcagaaagctaggaaac |
30840616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 8071622 - 8071574
Alignment:
| Q |
33 |
caatgattctttggactctatggaagaatcgtaactccaaactttggga |
81 |
Q |
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||||||||||||||| | | ||||||||||||||||| || |||||||| |
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| T |
8071622 |
caatgattctttggagtttgtggaagaatcgtaactctaagctttggga |
8071574 |
T |
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