View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_44 (Length: 269)
Name: NF1500_low_44
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 43313047 - 43313246
Alignment:
| Q |
44 |
agcatcaacactacaatccatatcaagaacttaataagaatttagtatcgttcatcatccagaatcattactttcaaaggctaatctatcaactagttgt |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43313047 |
agcatcaacactacaatccatatcaagaacttaataagaatttagtatcgttcatcatcaagaatcattactttcaaaggctaatctatcaactagttgt |
43313146 |
T |
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| Q |
144 |
ttttaacttcaataaattgattccttaagcactaactcaactgttgaaatagtttatcttctctaattcatagatacgccccactaaatattataaaata |
243 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43313147 |
ttttaacttaaataaattgattccttaagcactaactcaactgttgaaatagtttatcttctctaattcatagatatgccccactaaatattataaaata |
43313246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 21532094 - 21531895
Alignment:
| Q |
44 |
agcatcaacactacaatccatatcaagaacttaataagaatttagtatcgttcatcatccagaatcattactttcaaaggctaatctatcaactagttgt |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21532094 |
agcatcaacactacaatccatatcaagaacttaataagaatttagtatcgttcgtcatcaagaatcattactttcaaaggctaatctatcaactagttgt |
21531995 |
T |
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| Q |
144 |
ttttaacttcaataaattgattccttaagcactaactcaactgttgaaatagtttatcttctctaattcatagatacgccccactaaatattataaaata |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21531994 |
ttttaacttcaataaattgattccttaagcactaactcaactgttgaaatagtttatcttctctaattcatagatatgccccactaaatattataaaata |
21531895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 35168035 - 35167836
Alignment:
| Q |
44 |
agcatcaacactacaatccatatcaagaacttaataagaatttagtatcgttcatcatccagaatcattactttcaaaggctaatctatcaactagttgt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35168035 |
agcatcaacactacaatccatatcaagaacttaataagaatttagtatcgttcatcatcaagaatcattactttcaaaggctaatctatcaactagttgt |
35167936 |
T |
|
| Q |
144 |
ttttaacttcaataaattgattccttaagcactaactcaactgttgaaatagtttatcttctctaattcatagatacgccccactaaatattataaaata |
243 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35167935 |
ttttaactttaataaattgattccttaagcactaactcaactgttgaaatagtttatcttctctaattcatagatatgccccactaaatattataaaata |
35167836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 34744283 - 34744084
Alignment:
| Q |
44 |
agcatcaacactacaatccatatcaagaacttaataagaatttagtatcgttcatcatccagaatcattactttcaaaggctaatctatcaactagttgt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34744283 |
agcatcaacactacaatccatatcaagaacttaataagaatttagtatcgttcgtcatcaagaatcattactttcaaaggctaatctatcaactagttgt |
34744184 |
T |
|
| Q |
144 |
ttttaacttcaataaattgattccttaagcactaactcaactgttgaaatagtttatcttctctaattcatagatacgccccactaaatattataaaata |
243 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34744183 |
ttttaacttaaataaattgattccttaagcactaactcaactgttgaaatagtttatcttctctaattcatagatatgccccactaaatattataaaata |
34744084 |
T |
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