View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_5 (Length: 579)
Name: NF1500_low_5
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 38 - 557
Target Start/End: Original strand, 8199053 - 8199572
Alignment:
| Q |
38 |
tatttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaatataaatgcgataacagtctagtactccaac |
137 |
Q |
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| T |
8199053 |
tatttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaatataaatgcgaaaacagtctagtactccaac |
8199152 |
T |
|
| Q |
138 |
ttaaaaaccaacttcaaggcctaaaaacatggactgaaaaatgccaaaaacatccccaaagacactttcacacaatcatttaatcattatctagaaaggc |
237 |
Q |
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| T |
8199153 |
ttaaaaaccaacttcaaggcctaaaaacatggactgaaaaatgccaaaaacatccccaaagacactttcacacaatcatttaatcattatctagaaaggc |
8199252 |
T |
|
| Q |
238 |
ctaggataatccagttcctcgattatcaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagattaaatt |
337 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8199253 |
ctaggataatccagttcctcgattataaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagattaaatt |
8199352 |
T |
|
| Q |
338 |
aatatgaggttgttgtgatgatgatattggaggttagatcctcaaccaagtaacggatcctacttctaacattattcctcctctaagactgaatagatga |
437 |
Q |
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| T |
8199353 |
aatatgaggttgttgtgatgatgatattggaggttagatcctcaaccaagtaaccgatcctacttctaacattattcctcctctaagactgaatagatga |
8199452 |
T |
|
| Q |
438 |
tttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacccatttggctttcaatctcttcaaga |
537 |
Q |
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| T |
8199453 |
tttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacctatttggctttcaatctcttcaaga |
8199552 |
T |
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| Q |
538 |
cccatctcagtgggctgcat |
557 |
Q |
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|||||||||||||||||||| |
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| T |
8199553 |
cccatctcagtgggctgcat |
8199572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 425 - 558
Target Start/End: Original strand, 42356545 - 42356678
Alignment:
| Q |
425 |
actgaatagatgatttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacccatttggctttc |
524 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||| |||||| || |||| || ||||||||||||||||| ||||||||| ||| ||||||| |
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| T |
42356545 |
actgaattgatgatttccaaccttcaagacgctccttccacacagcacttttcaataaagtgatggtatctgactgtagaagagaacctattcggctttc |
42356644 |
T |
|
| Q |
525 |
aatctcttcaagacccatctcagtgggctgcatg |
558 |
Q |
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| T |
42356645 |
aatctcttcaagacccatctcagtgggctgcatg |
42356678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 42356161 - 42356291
Alignment:
| Q |
39 |
atttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaat---ataaatgcgataacagtcta--gtactc |
133 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||| | | || |||| |||||| |
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| T |
42356161 |
atttacttatagataccctagacggctagacctaaaatacatgtcaacaaagaataaattgaagtaaatatgataaatgcaaaaccattctattgtactc |
42356260 |
T |
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| Q |
134 |
caacttaaaaaccaacttcaaggcctaaaaa |
164 |
Q |
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||||||| ||| || |||||||||||||||| |
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| T |
42356261 |
caacttataaaacatcttcaaggcctaaaaa |
42356291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 259 - 420
Target Start/End: Original strand, 42356360 - 42356518
Alignment:
| Q |
259 |
attatcaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagatt---aaattaatatgaggttgttgtga |
355 |
Q |
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||||| ||| || |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||| |||||| ||||||| || |
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| T |
42356360 |
attataaataatcaaaacacctgagaaaaattacaggaaaatgtaccaagatatacaaaagcaaagcataaattatcaaattagtatgagggtg------ |
42356453 |
T |
|
| Q |
356 |
tgatgatattggaggttagatcctcaaccaagtaacggatcctacttctaacattattcctcctc |
420 |
Q |
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| |||| ||||||||||||||||||||||||| | |||| |||||| ||||| |||||||||| |
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| T |
42356454 |
taatgacgttggaggttagatcctcaaccaagttatcgatcttacttccaacatcattcctcctc |
42356518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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