View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_50 (Length: 257)

Name: NF1500_low_50
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_50
NF1500_low_50
[»] chr3 (2 HSPs)
chr3 (1-257)||(24226820-24227075)
chr3 (166-257)||(24219143-24219234)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-257)||(43613-43868)
[»] chr6 (43 HSPs)
chr6 (1-257)||(30149527-30149782)
chr6 (16-257)||(24934667-24934907)
chr6 (39-242)||(30053442-30053644)
chr6 (16-257)||(30135125-30135366)
chr6 (37-257)||(29949677-29949896)
chr6 (16-257)||(24942200-24942440)
chr6 (1-257)||(24738939-24739194)
chr6 (37-257)||(29953474-29953693)
chr6 (1-257)||(21160369-21160624)
chr6 (24-254)||(24898080-24898309)
chr6 (72-257)||(29898077-29898257)
chr6 (72-257)||(29887297-29887481)
chr6 (16-152)||(30577527-30577662)
chr6 (106-257)||(30126903-30127054)
chr6 (75-257)||(29366239-29366420)
chr6 (60-257)||(29348401-29348597)
chr6 (166-257)||(24730855-24730946)
chr6 (106-257)||(29357827-29357978)
chr6 (61-256)||(29889731-29889925)
chr6 (160-257)||(30061897-30061994)
chr6 (73-257)||(28926363-28926546)
chr6 (109-257)||(30118592-30118740)
chr6 (26-237)||(15726958-15727168)
chr6 (154-257)||(29905639-29905742)
chr6 (61-256)||(29929274-29929468)
chr6 (166-257)||(30060070-30060161)
chr6 (166-257)||(24890154-24890245)
chr6 (166-257)||(29073763-29073854)
chr6 (166-257)||(29078527-29078618)
chr6 (166-257)||(29106336-29106427)
chr6 (151-256)||(29099344-29099449)
chr6 (168-257)||(29211303-29211392)
chr6 (166-257)||(24271855-24271946)
chr6 (166-257)||(30999846-30999937)
chr6 (151-256)||(29116262-29116367)
chr6 (72-257)||(29835215-29835399)
chr6 (72-257)||(29866649-29866833)
chr6 (72-257)||(29894553-29894737)
chr6 (166-254)||(29946440-29946528)
chr6 (61-256)||(29085019-29085213)
chr6 (166-256)||(16702063-16702153)
chr6 (166-255)||(24263660-24263749)
chr6 (205-257)||(29876825-29876877)
[»] chr4 (1 HSPs)
chr4 (16-257)||(44262352-44262592)
[»] chr8 (1 HSPs)
chr8 (1-210)||(9782586-9782794)
[»] chr1 (2 HSPs)
chr1 (41-257)||(17251313-17251528)
chr1 (155-249)||(10130145-10130239)
[»] chr7 (1 HSPs)
chr7 (71-254)||(8651268-8651450)
[»] scaffold0572 (1 HSPs)
scaffold0572 (27-257)||(3233-3462)
[»] scaffold0429 (1 HSPs)
scaffold0429 (27-257)||(6196-6425)
[»] chr2 (1 HSPs)
chr2 (166-254)||(15062784-15062872)
[»] scaffold0014 (1 HSPs)
scaffold0014 (26-256)||(121249-121478)
[»] scaffold0573 (1 HSPs)
scaffold0573 (73-257)||(4137-4320)
[»] scaffold0054 (1 HSPs)
scaffold0054 (204-257)||(53542-53595)
[»] scaffold0051 (2 HSPs)
scaffold0051 (174-219)||(43201-43246)
scaffold0051 (169-257)||(47814-47902)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 24227075 - 24226820
Alignment:
Q  1 cagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24227075 cagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcttgtgcatccctaagtcttccatttttgcacagtccatcaac 24226976  T
Q  101 aaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatcc 200  Q
    || |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24226975 aa-gtatagtgtatgtatagatatttggccgaattccttgattcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatcc 24226877  T
Q  201 atctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24226876 atctaataaagaattgtaagtgattatgttagctggttgacctctatcatgcatctc 24226820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 24219143 - 24219234
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||||||||||||| |||||||||||||| ||  |||| ||||||||||||||| | ||||| |||| ||||||||||||||||||||||||    
T  24219143 attgccttgtcaacatgatggtttttgcataaagcatccaataaagaattgtaagtaattatattaggtggttgacctctatcatgcatctc 24219234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 43613 - 43868
Alignment:
Q  1 cagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaac 100  Q
    |||||||||||||||||||||| ||||||   |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  43613 cagtatatatcctagcatctaaatgataggtgttattcagaagaacctgataaacctcttgtgcatccctaagttttccatttttgcacagtccatcaac 43712  T
Q  101 aaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatcc 200  Q
    || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43713 aa-gtatagtgtatgtatagatatctagctgaattccttggttcttgatcttcgttaacaaagtgattgccttgtcaacctgatggtttttgcacaatcc 43811  T
Q  201 atctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||    
T  43812 atctaataaagaactgtaagtgataatgttcgctggttgacctctatcatgcatctc 43868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 30149782 - 30149527
Alignment:
Q  1 cagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaac 100  Q
    ||||||| ||| |||||||||| |||||||||||| ||  ||||||| ||||||| || |||||||||  ||||||||| |||||||| |||||| |||     
T  30149782 cagtatacatcttagcatctaaatgatagcctttaatcgtaagatcccgataaacttcttgtgcatcctcaagtcttccgtttttgcatagtccaacaa- 30149684  T
Q  101 aaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatcc 200  Q
    ||||||||||||||| ||| ||| ||||||||||||| ||||  ||||||||  |||| ||||  |||||| ||||||||||||||||||||||||||||    
T  30149683 aaagtatagtgtatgaatacatacttggctgaattccctggtctttgatcttttttaataatgcaattgccctgtcaacctgatggtttttgcacaatcc 30149584  T
Q  201 atctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||| ||||||||||||||| |||||||||  | ||||||||||||||||||||||||    
T  30149583 atcaaataaagaattgtaagtgattatgtcggttggttgacctctatcatgcatctc 30149527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 24934907 - 24934667
Alignment:
Q  16 catctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatg 115  Q
    ||||||| |||||||| ||| | |||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |    
T  24934907 catctaaatgatagcccttaataagaagatcctgataaaccgcttgtgcatccttaagtcttccatttttgcatagtccatcaacaa-gtatagtgtaag 24934809  T
Q  116 tatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaatt 215  Q
    |||| ||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||| ||||| ||| |    
T  24934808 tataaatatttggctgaattccttggtctttgatcttcgttattaatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaact 24934709  T
Q  216 gtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||| |||| |  |  || ||||| ||||||| |||||||||    
T  24934708 gtaagtgatcacatcggcaggttggcctctattatgcatctc 24934667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 242
Target Start/End: Complemental strand, 30053644 - 30053442
Alignment:
Q  39 agaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattcct 138  Q
    |||||||||||||||| |   ||||||||| ||||||||||||||||||| ||||||||||||| || | ||||||||| | |||| |||||||||||||    
T  30053644 agaagatcctgataaatcctttgtgcatccttaagtcttccatttttgcatagtccatcaacaa-gtgttgtgtatgtaaacatatctggctgaattcct 30053546  T
Q  139 tggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggtt 238  Q
    | ||  || |||||||||||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  30053545 tcgtctttcatcttcgttaacaacgcaattgccttgtcaacctgatggtttttgcacaatccatataataaagaattgtaagtgattatattagctggtt 30053446  T
Q  239 gacc 242  Q
    ||||    
T  30053445 gacc 30053442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 30135366 - 30135125
Alignment:
Q  16 catctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatg 115  Q
    ||||||| ||||| || ||| |||||||||| ||||||||| | | ||||||| ||||| ||||||||||||| | ||||||||||| |||  |||||||    
T  30135366 catctaaatgatatcccttaatcagaagatcttgataaaccgcttttgcatccttaagttttccatttttgcatattccatcaacaa-gtaatgtgtatg 30135268  T
Q  116 tatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtc-aacctgatggtttttgcacaatccatctaataaagaat 214  Q
    |||| | |||||||||||| |||||||  |||||||||||||| ||||||||||||||||| |||||||||||||||||||||  |||| ||||||||||    
T  30135267 tatacaaatttggctgaataccttggtctttgatcttcgttaataatgtgattgccttgtcaaacctgatggtttttgcacaaagcatccaataaagaat 30135168  T
Q  215 tgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||| |||| |  ||||| ||||||||||| |||||||||||    
T  30135167 tgtaagtgatcacattagcaggttgacctctttcatgcatctc 30135125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 37 - 257
Target Start/End: Original strand, 29949677 - 29949896
Alignment:
Q  37 tcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattc 136  Q
    |||||||||| ||||||| ||| |||||||||  |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  29949677 tcagaagatcatgataaatctcttgtgcatcctcaagtcttccatttttgcatagtccatcaacaa-gtatagtgtatgtatacatatttggctgaattc 29949775  T
Q  137 cttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctgg 236  Q
    ||||||  || |||||  |||| ||||  || |||||||||||||||||||||||||| ||  |||||||||||||||||||| |||| |  ||||| ||    
T  29949776 cttggtcttttatcttttttaataatgcaatcgccttgtcaacctgatggtttttgcataaagcatctaataaagaattgtaagtgatcacattagcagg 29949875  T
Q  237 ttgacctctatcatgcatctc 257  Q
    ||| ||| |||||||||||||    
T  29949876 ttggcctatatcatgcatctc 29949896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 24942440 - 24942200
Alignment:
Q  16 catctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatg 115  Q
    ||||||| |||||||| |||   ||||||| |||||||||| | ||||||| | ||| ||||||||||||||| ||||||||||||| |||||||||| |    
T  24942440 catctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaa-gtatagtgtaag 24942342  T
Q  116 tatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaatt 215  Q
    |||| ||||||||||||||||||||||  ||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||  |||| ||||| |||||    
T  24942341 tatacatatttggctgaattccttggtctttgatcttcattaataatgtaattgccttgtcaacctgatggtttttgaacaaagcatccaataaggaatt 24942242  T
Q  216 gtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||  |||| |  | ||| ||||| ||||||| |||||||||    
T  24942241 gtacgtgatcacatcagcaggttggcctctattatgcatctc 24942200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 24738939 - 24739194
Alignment:
Q  1 cagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaac 100  Q
    ||||||| |||||  | ||||| |||||||||||| ||| ||||  |||||||||||| || || ||| | ||||||||||||||||| |  ||||||||    
T  24738939 cagtatacatcctcacgtctaaatgatagcctttaatcaaaagaatctgataaacctcttgcgcgtccttgagtcttccatttttgcataaaccatcaac 24739038  T
Q  101 aaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatcc 200  Q
    || |||| ||||||||||| ||||  ||||||||||||||||  ||||||||||| |  ||||||||||||||||||||||||||||||||||||||  |    
T  24739039 aa-gtattgtgtatgtatatatatccggctgaattccttggtctttgatcttcgtaagtaatgtgattgccttgtcaacctgatggtttttgcacaaagc 24739137  T
Q  201 atctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||| ||||| ||||||||| |||| |  | ||| ||||| ||||||| |||||||||    
T  24739138 atccaataaggaattgtaagtgatcacatcagcaggttggcctctattatgcatctc 24739194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 37 - 257
Target Start/End: Original strand, 29953474 - 29953693
Alignment:
Q  37 tcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattc 136  Q
    |||||||||| ||||||| |||  ||||||||  |||||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||| |    
T  29953474 tcagaagatcatgataaatctctcgtgcatccgcaagtcttccatttttgcatagcccatcaacaa-gtatagtgtatgtatacatatttggctgaatcc 29953572  T
Q  137 cttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctgg 236  Q
    ||||||  || |||||| |||| ||||  || |||||||||||||||||||||||||||||  |||| ||||||||||||||| |||| |  ||| | ||    
T  29953573 cttggtctttcatcttctttaataatgcaatcgccttgtcaacctgatggtttttgcacaaagcatccaataaagaattgtaagtgatcacattaaccgg 29953672  T
Q  237 ttgacctctatcatgcatctc 257  Q
    ||||| ||||| |||||||||    
T  29953673 ttgacatctattatgcatctc 29953693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 21160369 - 21160624
Alignment:
Q  1 cagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaac 100  Q
    ||||||| |||||  | ||||| |||||||||||| ||| ||||  |||||| ||||| || || ||| ||||||||||||||||||| |  ||||||||    
T  21160369 cagtatacatcctcacgtctaaatgatagcctttaatcaaaagaatctgatagacctcttgcgcgtccttaagtcttccatttttgcataaaccatcaac 21160468  T
Q  101 aaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatcc 200  Q
    || |||| ||||||||||| ||||  ||||||||||||||||  || |||||||| || |||||||||||| |||||||||||||||||||||||||  |    
T  21160469 aa-gtattgtgtatgtatatatatacggctgaattccttggtcttttatcttcgtaaataatgtgattgccatgtcaacctgatggtttttgcacaaagc 21160567  T
Q  201 atctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||| ||||| ||||||||| |||| |  | ||| ||||| ||||||| |||||||||    
T  21160568 atccaataaggaattgtaagtgatcacatcagcaggttggcctctattatgcatctc 21160624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 24898309 - 24898080
Alignment:
Q  24 tgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagata 123  Q
    |||||||| |||  || ||||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| | || ||||||||  | |||    
T  24898309 tgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaa-gcattgtgtatgtgaacata 24898211  T
Q  124 tttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactga 223  Q
    | ||| | ||||||  |||  ||||||||| | || || |  |||||||||||||| |||||||||||  ||||| |||| ||||| ||  ||||| |||    
T  24898210 tctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatga 24898111  T
Q  224 ttatgttagctggttgacctctatcatgcat 254  Q
    |||||| |||| |||||||||||||||||||    
T  24898110 ttatgtcagcttgttgacctctatcatgcat 24898080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 29898257 - 29898077
Alignment:
Q  72 agtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgcc 171  Q
    |||||||||||||| || ||||||||||||| || | ||||||||| | |||| |||||||||||    ||  || ||||| |||||||| |||||||||    
T  29898257 agtcttccatttttccatagtccatcaacaa-gtgttgtgtatgtacaaatatctggctgaattc----gtctttaatctttgttaacaacgtgattgcc 29898163  T
Q  172 ttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||| ||  |||  |||| |||| ||||  | ||||| |||| ||||||||||||||||||||||||    
T  29898162 ttgtcaacctgatggtttttgcataaagcattcaatatagaactgtacgtaattatattaggtggttgacctctatcatgcatctc 29898077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 29887481 - 29887297
Alignment:
Q  72 agtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgcc 171  Q
    |||||||||  ||| ||||||||||||| || | ||||||||||| || ||||||||  |||| || ||||  || |  || ||||| || |  ||||||    
T  29887481 agtcttccacctttacacagtccatcaataa-gaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaataacgcaattgcc 29887383  T
Q  172 ttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||| ||  |||||||||||||| ||||| | ||||| | || ||||||||||||||||||||||||    
T  29887382 ttgtcaacctgatggtttttgcataaagcatctaataaagaactgtaagtaattatatcaggtggttgacctctatcatgcatctc 29887297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 30577527 - 30577662
Alignment:
Q  16 catctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatg 115  Q
    |||||||  ||||||| ||| |||||||||| ||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  30577527 catctaaacgatagcccttaatcagaagatcatgaaaaatctcttgtgcatccttaagtcttccatttttgcacagtccatcaac-aagtatattgtatg 30577625  T
Q  116 tatagatatttggctgaattccttggttcttgatctt 152  Q
    ||   |||||||||| || ||||| ||  ||||||||    
T  30577626 taaccatatttggctcaaatcctttgtctttgatctt 30577662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 30126903 - 30127054
Alignment:
Q  106 atagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatcta 205  Q
    ||||||||||| || | | |||| ||||| || ||||| || |  |||||||||||||  ||||| ||||||||||||||||||||||| ||  |||| |    
T  30126903 atagtgtatgtgtacacacttggttgaataccctggtttttaaatttcgttaacaatgcaattgctttgtcaacctgatggtttttgcataaagcatcca 30127002  T
Q  206 ataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||| |||||||||| | ||||| | || ||||||||||||||||||||||||    
T  30127003 atatagaattgtaaataattatatcaggtggttgacctctatcatgcatctc 30127054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 29366239 - 29366420
Alignment:
Q  75 cttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttg 174  Q
    |||||||||||||| ||||||||||| || | | ||||||||| | |||| ||| ||||||||||  |  || |||||||||||||| |  |||||||||    
T  29366239 cttccatttttgcatagtccatcaactaa-tgttgtgtatgtacaaatatctggttgaattccttcatctttcatcttcgttaacaacgcaattgccttg 29366337  T
Q  175 tcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||||||||||||||||||| ||  |||| |||| |||||||||| | ||| | | |  ||||  ||||||||||||||||||    
T  29366338 tcaacctgatggtttttgcataaagcatccaatatagaattgtaagtaattttatcatgtggtacacctctatcatgcatctc 29366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 257
Target Start/End: Original strand, 29348401 - 29348597
Alignment:
Q  60 tgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaac 159  Q
    ||||||||| | |||||||||  ||| |||| |||||||| || | ||||||||||| || |||| ||| ||||||||||  |  || ||||||||||||    
T  29348401 tgtgcatcctttagtcttccacctttacacaatccatcaataa-gaatagtgtatgtgtacatatctggttgaattccttcatctttcatcttcgttaac 29348499  T
Q  160 aatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    || |  ||||||||||||||||||||||||||||| ||  |||| |||| |||||||||| | ||| | | |  ||||  ||||||||||||||||||    
T  29348500 aacgcaattgccttgtcaacctgatggtttttgcataaagcatccaatatagaattgtaagtaattttatcatgtggtacacctctatcatgcatctc 29348597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 24730946 - 24730855
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||||||||||||| |||||||||||||| ||  |||| |||| |||||||||| | ||||| |||| ||||||||||||||||||||||||    
T  24730946 attgccttgtcaacatgatggtttttgcataaagcatccaatatagaattgtaagttattatattaggtggttgacctctatcatgcatctc 24730855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 29357827 - 29357978
Alignment:
Q  106 atagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatcta 205  Q
    ||||||||||| || |||||||| ||||| || ||||| || ||||  ||||| || |  ||||| ||||||||||||||||||||||| ||  |||| |    
T  29357827 atagtgtatgtgtacatatttggttgaataccctggtttttcatctgtgttaataacgcaattgcattgtcaacctgatggtttttgcataaagcatcca 29357926  T
Q  206 ataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||| |||| ||||| | | ||| |||| ||||||||||||||||||||||||    
T  29357927 atatagaactgtaagtaactatattaggtggttgacctctatcatgcatctc 29357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 29889925 - 29889731
Alignment:
Q  61 gtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaaca 160  Q
    |||||||| | |||||||||  |||||||| |||||||| || | ||||||||||| || | |||||| ||||| |  ||||  || |  |||||| |||    
T  29889925 gtgcatcctttagtcttccacctttgcacaatccatcaataa-gaatagtgtatgtttacacatttggttgaatactctggtctttaaatttcgttgaca 29889827  T
Q  161 atgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatct 256  Q
    |||  ||||  ||||||||||||||| ||||||| ||  ||||||||| |||||||||| ||| ||| |||| ||||  |||||||||||||||||    
T  29889826 atgcaattgttttgtcaacctgatgggttttgcataaagcatctaatatagaattgtaagtgactatattaggtggtacacctctatcatgcatct 29889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 30061897 - 30061994
Alignment:
Q  160 aatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||||||||||||||||||  ||||||  |||||| ||  |||| |||| |||||||||| | ||||| |||| ||||||||||||||||||||||||    
T  30061897 aatgtgattgccttgtcaagatgatggcgtttgcataaagcatccaatatagaattgtaagtaattatattaggtggttgacctctatcatgcatctc 30061994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 257
Target Start/End: Original strand, 28926363 - 28926546
Alignment:
Q  73 gtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgcct 172  Q
    ||||||||  ||| |||||||||| || || | ||||||||||| || |||||||| ||||  || ||||  || |  || ||||| ||||  |||||||    
T  28926363 gtcttccacctttacacagtccattaataa-gaatagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaataatgcaattgcct 28926461  T
Q  173 tgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||| |||||||||||||| ||  |||| |||| |||| ||||| | ||||| | || ||||||||||||||||||||||||    
T  28926462 tgtcaacatgatggtttttgcataaagcatccaatagagaactgtaagtaattatatcaggtggttgacctctatcatgcatctc 28926546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 257
Target Start/End: Original strand, 30118592 - 30118740
Alignment:
Q  109 gtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaata 208  Q
    |||||||| || |||||||| ||||||||  |||  || |  || ||||| ||||||||||||||||||||||||| ||||||||| ||  |||| ||||    
T  30118592 gtgtatgtgtacatatttggttgaattcccaggtctttcaattttgttaataatgtgattgccttgtcaacctgatagtttttgcataaagcatccaata 30118691  T
Q  209 aagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
     |||| | ||| | ||||| | || ||| ||||||||||||||||||||    
T  30118692 tagaactctaagtaattatatcaggtggctgacctctatcatgcatctc 30118740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 15726958 - 15727168
Alignment:
Q  26 atagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatt 125  Q
    |||||||||| ||| |||||| ||| ||| | | ||||||||| |||||||||| | |||||| |||||||| | || ||||| | |||||||| ||||     
T  15726958 atagcctttaatcaaaagatcttgaaaaatcacttgtgcatccttaagtcttccttgtttgcatagtccatcgataa-gtatactatatgtatacatatc 15727056  T
Q  126 tggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgatt 225  Q
    ||  ||||| || ||||  ||||| ||| | |  |||   |||||||||||||| |||||||||||||| ||  |||||| ||| ||||||||| ||| |    
T  15727057 tgattgaatgccctggtctttgattttcttgactaatacaattgccttgtcaacgtgatggtttttgcataaagcatctattaacgaattgtaagtgaat 15727156  T
Q  226 atgttagctggt 237  Q
    ||||| ||||||    
T  15727157 atgttggctggt 15727168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 29905742 - 29905639
Alignment:
Q  154 gttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgca 253  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||  |||| |||| |||| | ||| | ||||| | || ||| ||||||||||||||||    
T  29905742 gttaataatgtgattgccttgtcaacctgatagtttttgcataaagcatccaatatagaactctaagtaattatatcaggtggctgacctctatcatgca 29905643  T
Q  254 tctc 257  Q
    ||||    
T  29905642 tctc 29905639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 29929468 - 29929274
Alignment:
Q  61 gtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaaca 160  Q
    |||||||| | |||||||||  ||| |||| ||| |||| || | ||||||||||| || | | |||| ||||| || ||||  ||||  ||||||||||    
T  29929468 gtgcatcctttagtcttccacctttacacaatccgtcaataa-gaatagtgtatgtgtacacacttggttgaataccctggtctttgaatttcgttaaca 29929370  T
Q  161 atgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatct 256  Q
    |||  ||||| ||||||||||||||| ||||||| ||  ||||||||| |||||||||| | | ||| |||| || |  |||||||||||||||||    
T  29929369 atgcaattgctttgtcaacctgatgggttttgcataaagcatctaatatagaattgtaagtaactatattaggtgctacacctctatcatgcatct 29929274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 30060070 - 30060161
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||||||||| ||  ||| ||||| |||||||||| | ||||| | || | ||||||||||||||| ||||||    
T  30060070 attgccttgtcaacctgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctc 30060161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 24890154 - 24890245
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||||||||||||| |||||||||||||| ||  |||| |||| |||| ||||| | | ||| |||| ||| ||||||||||||||||||||    
T  24890154 attgccttgtcaacatgatggtttttgcataaagcatccaatatagaactgtaagtaactatattaggtggctgacctctatcatgcatctc 24890245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 29073854 - 29073763
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||||||||| ||  |||| |||| |||| ||||| | ||||| | || ||||  ||||||||||||||||||    
T  29073854 attgccttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctc 29073763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 29078618 - 29078527
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||||||||| ||  |||| |||| |||| ||||| | ||||| | || ||||  ||||||||||||||||||    
T  29078618 attgccttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctc 29078527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 29106427 - 29106336
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||||||||| ||  |||| |||| |||| ||||| | ||||| | || ||||  ||||||||||||||||||    
T  29106427 attgccttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctc 29106336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 29099449 - 29099344
Alignment:
Q  151 ttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcat 250  Q
    |||||||||||||  ||||| |||||||| |||||| ||||||| ||  ||||||||| |||||||||| |   ||| |||| ||||  |||||||||||    
T  29099449 ttcgttaacaatgcaattgctttgtcaacttgatgggttttgcataaagcatctaatatagaattgtaagtacatatattaggtggtacacctctatcat 29099350  T
Q  251 gcatct 256  Q
    ||||||    
T  29099349 gcatct 29099344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 29211303 - 29211392
Alignment:
Q  168 tgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||| ||||| ||||||| ||  |||| |||| |||| ||||| | | ||| |||| ||||||||||||||||||||||||    
T  29211303 tgccttgtcaacccgatgggttttgcataaagcatccaatatagaactgtaagtaactatattaggtggttgacctctatcatgcatctc 29211392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 24271855 - 24271946
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||||||||| ||  |||| |||| |||| ||||  ||||||| | || | |||| |||| ||||||||||||    
T  24271855 attgccttgtcaacctgatggtttttgcataaatcatccaatatagaactgtacgtgattatatcaggttgttgccctcgatcatgcatctc 24271946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 30999846 - 30999937
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||| ||||||  ||||||||||||| ||  |||| |||| |||| ||||| | | ||| |||| ||||||||||||||||||||||||    
T  30999846 attgcctggtcaacacgatggtttttgcataaagcatccaatatagaactgtaaataactatattaggtggttgacctctatcatgcatctc 30999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 29116367 - 29116262
Alignment:
Q  151 ttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcat 250  Q
    |||||||||||||  ||||| |||||||| |||||| ||||||| ||  ||||||||| |||||||||| |   |||  ||| ||||  |||||||||||    
T  29116367 ttcgttaacaatgcaattgctttgtcaacttgatggattttgcataaagcatctaatatagaattgtaagtacgtatagtaggtggtacacctctatcat 29116268  T
Q  251 gcatct 256  Q
    ||||||    
T  29116267 gcatct 29116262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 29835399 - 29835215
Alignment:
Q  72 agtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgcc 171  Q
    |||||||||  ||| ||||||||||||| || | ||||||||||| || ||||||||  |||| || ||||  || |  || ||||| || |  ||||||    
T  29835399 agtcttccacctttacacagtccatcaataa-gaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgcc 29835301  T
Q  172 ttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||| ||  |||| |||| |||| ||||| | ||||| | || ||||  ||| | ||||||||||||    
T  29835300 ttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacaccccgatcatgcatctc 29835215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 29866833 - 29866649
Alignment:
Q  72 agtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgcc 171  Q
    |||||||||  ||| ||||||||||||| || | ||||||||||| || ||||||||  |||| || ||||  || |  || ||||| || |  ||||||    
T  29866833 agtcttccacctttacacagtccatcaataa-gaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaataacgcaattgcc 29866735  T
Q  172 ttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||| ||  |||| |||| |||| ||||| | ||||| | || ||||  ||| | ||||||||||||    
T  29866734 ttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacaccccgatcatgcatctc 29866649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 29894737 - 29894553
Alignment:
Q  72 agtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgcc 171  Q
    |||||||||  ||| ||||||||||||| || | ||||||||||| || ||||||||  |||| || ||||  || |  || ||||| || |  ||||||    
T  29894737 agtcttccacctttacacagtccatcaataa-gaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgcc 29894639  T
Q  172 ttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||||||||||||||||||||| ||  |||| |||| |||| ||||| | ||||| | || ||||  ||| | ||||||||||||    
T  29894638 ttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacaccccgatcatgcatctc 29894553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 29946528 - 29946440
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcat 254  Q
    |||||||||||||| | || ||| ||||| ||  |||| |||| ||| |||||| | ||||| |||| |||||||||||||||||||||    
T  29946528 attgccttgtcaacatcatagttcttgcataaaacatccaatatagagttgtaagtaattatattaggtggttgacctctatcatgcat 29946440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 29085213 - 29085019
Alignment:
Q  61 gtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaaca 160  Q
    |||||||| | |||||||||  ||| |||| |||||||| || | ||||||||||| || ||  |||| ||||| || ||||  || |  ||||||| ||    
T  29085213 gtgcatcctttagtcttccacctttacacaatccatcaataa-gaatagtgtatgtgtacatgcttggttgaataccctggtctttaaatttcgttatca 29085115  T
Q  161 atgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatct 256  Q
    |||  ||||| |||||||| |||||| ||||| | ||  |||||| || |||||||||| | | ||| |||| ||||  |||||||||||||||||    
T  29085114 atgcaattgctttgtcaacttgatgggttttgaataaagcatctattatagaattgtaagtaagtatattaggtggtacacctctatcatgcatct 29085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 16702063 - 16702153
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatct 256  Q
    |||||||||||||| ||||||||||| || ||  ||| |||||| ||||||||| ||||||  || |  ||||| ||||||||| ||||||    
T  16702063 attgccttgtcaacatgatggtttttacataaagcatgtaataaggaattgtaagtgattacattgggaggttggcctctatcacgcatct 16702153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 24263660 - 24263749
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatc 255  Q
    ||||||||||||||| ||||||||||||| ||  |||| |||| |||| ||||  ||||||| | || | |||| |||| ||||||||||    
T  24263660 attgccttgtcaaccagatggtttttgcataaggcatccaatatagaactgtacgtgattatatcaggttgttgccctcgatcatgcatc 24263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 29876877 - 29876825
Alignment:
Q  205 aataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||| |||||||||| | ||||| |||| |||||| |||||||||||||||||    
T  29876877 aatatagaattgtaagtaattatattaggtggttggcctctatcatgcatctc 29876825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 44262352 - 44262592
Alignment:
Q  16 catctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatg 115  Q
    ||||||| |||||||| ||| | ||||||| |||||||||| | ||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| |    
T  44262352 catctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtcttccatttttgcatagtccgtcaacaa-gtatagtgtaag 44262450  T
Q  116 tatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaatt 215  Q
    |||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||| ||||| |||||    
T  44262451 tatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaatt 44262550  T
Q  216 gtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||| |||| |  | ||| ||||| ||| ||| |||||||||    
T  44262551 gtaagtgataacatcagcaggttggcctatattatgcatctc 44262592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 9782794 - 9782586
Alignment:
Q  1 cagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaac 100  Q
    ||||||| |||||||||||||| ||||| |||||| ||  ||||||| ||||||||   ||||||||| |||||||||||||||||||||||||||||||    
T  9782794 cagtatacatcctagcatctaaatgataacctttaatcgtaagatcccgataaaccctttgtgcatccttaagtcttccatttttgcacagtccatcaac 9782695  T
Q  101 aaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatcc 200  Q
     |||||||||||||||| | |||| |||||||||||||| ||  || ||||| |||||||| |  ||||||||||||||||||||| ||||||||||  |    
T  9782694 -aagtatagtgtatgtacacatatctggctgaattccttcgtctttcatctttgttaacaacgcaattgccttgtcaacctgatggattttgcacaaagc 9782596  T
Q  201 atctaataaa 210  Q
    ||| ||||||    
T  9782595 atccaataaa 9782586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 257
Target Start/End: Complemental strand, 17251528 - 17251313
Alignment:
Q  41 aagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttg 140  Q
    |||||||||| ||||||  || |||||  ||||||| |||| |||||| ||||||||||||| ||||| |||||||||| ||||||| |||||| |||||    
T  17251528 aagatcctgaaaaaccttctgagcatctgtaagtctaccatctttgcaaagtccatcaacaa-gtatattgtatgtatacatatttgcctgaataccttg 17251430  T
Q  141 gttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttga 240  Q
     |  || || ||| |||  ||||  |||||||| ||||| |||||| ||||||||||  ||||||  |||||| ||||| | ||||  |||| |||||||    
T  17251429 atctttaattttctttagtaatgcaattgccttatcaacttgatggcttttgcacaaagcatctatcaaagaagtgtaagttattacattaggtggttga 17251330  T
Q  241 cctctatcatgcatctc 257  Q
    |||||||||||||||||    
T  17251329 cctctatcatgcatctc 17251313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 10130239 - 10130145
Alignment:
Q  155 ttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatca 249  Q
    ||||||||| |||||| |||||||| || || |||| ||| ||  |||  ||||||||||||||| | ||||| |||| | ||||||||||||||    
T  10130239 ttaacaatgcgattgctttgtcaacatggtgattttggcataaagcattcaataaagaattgtaagtaattatattaggttgttgacctctatca 10130145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 254
Target Start/End: Complemental strand, 8651450 - 8651268
Alignment:
Q  71 aagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgc 170  Q
    |||||||||||||||||| ||||||||||||| |||  |||||| |  | |||| ||| | |||||  ||||  ||||||||| | || ||||  |||||    
T  8651450 aagtcttccatttttgcatagtccatcaacaa-gtagtgtgtatatgaacatatatggttcaattctatggtctttgatcttcttcaataatgcaattgc 8651352  T
Q  171 cttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcat 254  Q
    | ||| ||||| |||||||||| ||||| |||| ||||||||| ||||| ||||||||| |||| |||||| ||||||||||||    
T  8651351 catgtaaaccttatggtttttgaacaatgcatcaaataaagaagtgtaagtgattatgtcagcttgttgacatctatcatgcat 8651268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 3462 - 3233
Alignment:
Q  27 tagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatattt 126  Q
    ||||||||| ||| |||||||||| ||| | | ||||||||| |||| ||||| | |||||| |||||||| | || ||||| ||||||| || |||| |    
T  3462 tagcctttaatcaaaagatcctgaaaaatcacttgtgcatccttaagccttccttgtttgcatagtccatcgataa-gtatattgtatgtgtacatatct 3364  T
Q  127 ggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgatta 226  Q
     | ||||| |||||||  || || ||| | |  ||||  || ||||||||||| |||||||||||||| ||  |||||| ||| ||||||||| ||||||    
T  3363 agttgaatgccttggtctttaattttcttgactaatgcaatagccttgtcaacatgatggtttttgcataaagcatctattaatgaattgtaagtgatta 3264  T
Q  227 tgttagctggttgacctctatcatgcatctc 257  Q
    | | |||||||||||| |||||| |||||||    
T  3263 tatcagctggttgaccactatcacgcatctc 3233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 6425 - 6196
Alignment:
Q  27 tagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatattt 126  Q
    ||||||||| ||| |||||||||| ||| | | ||||||||| |||| ||||| | |||||| |||||||| | || ||||| ||||||| || ||||||    
T  6425 tagcctttaatcaaaagatcctgaaaaatcacttgtgcatccttaagccttccttgtttgcatagtccatcgataa-gtatattgtatgtgtacatattt 6327  T
Q  127 ggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgatta 226  Q
     | ||||| |||||||  || || ||| | |  |||   || ||||||||||| |||||||||||||| ||| |||||| ||||||||||||| ||  ||    
T  6326 agttgaatgccttggtctttaattttcttgactaatacaatagccttgtcaacatgatggtttttgcataatgcatctattaaagaattgtaagtgcata 6227  T
Q  227 tgttagctggttgacctctatcatgcatctc 257  Q
    ||| || |||||||||  ||||| |||||||    
T  6226 tgtcaggtggttgaccattatcacgcatctc 6196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 15062784 - 15062872
Alignment:
Q  166 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcat 254  Q
    |||||||| ||||| |||| ||||||||| |   ||||||||| |||||||||| | ||||| |||| |||||||||||||||||||||    
T  15062784 attgccttatcaacatgattgtttttgcatatagcatctaatatagaattgtaagtaattatattagatggttgacctctatcatgcat 15062872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 121249 - 121478
Alignment:
Q  26 atagcctttattcagaagatcctgataaacctcgtgtgcatccctaagtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatt 125  Q
    |||||||||| ||| |||||||||| ||| | | ||||||| |  ||||||||| | |||||| |||||||| | || ||||| ||||||| |  |||||    
T  121249 atagcctttaatcaaaagatcctgaaaaatcacttgtgcattctcaagtcttccttctttgcatagtccatcgataa-gtatattgtatgtgttaatatt 121347  T
Q  126 tggctgaattccttggttcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgatt 225  Q
     || ||||| || || |  || || ||| | | |||||  |||||||||||||| ||||| |||||||| ||  |||  ||||| ||||||||  ||||     
T  121348 gggttgaatgccctgatctttaattttcttgaccaatgcaattgccttgtcaacttgatgatttttgcataaagcatgcaataaggaattgtatgtgata 121447  T
Q  226 atgttagctggttgacctctatcatgcatct 256  Q
    || || || ||||||||||||||||||||||    
T  121448 atattggcaggttgacctctatcatgcatct 121478  T

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Target: scaffold0573 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 257
Target Start/End: Complemental strand, 4320 - 4137
Alignment:
Q  73 gtcttccatttttgcacagtccatcaacaaagtatagtgtatgtatagatatttggctgaattccttggttcttgatcttcgttaacaatgtgattgcct 172  Q
    ||||||||  ||| |||||||||| || || | ||||||||||| || |||||||| ||||  || ||||  || |  || ||||| ||||  |||||||    
T  4320 gtcttccacctttacacagtccattaataa-gaatagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaataatgcaattgcct 4222  T
Q  173 tgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||| |  ||||||||||||| ||  |||| |||| |||| ||||| | ||||| | || ||||||||||||||||||||||||    
T  4221 tgtcacctggatggtttttgcataaagcatccaatagagaactgtaagtaattatatcaggtggttgacctctatcatgcatctc 4137  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 53542 - 53595
Alignment:
Q  204 taataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    ||||| |||||||||| | ||||| |||| ||||||||||||||||||||||||    
T  53542 taatatagaattgtaagtaattatattaggtggttgacctctatcatgcatctc 53595  T

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Target: scaffold0051 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 43201 - 43246
Alignment:
Q  174 gtcaacctgatggtttttgcacaatccatctaataaagaattgtaa 219  Q
    |||||| |||||||||||||| ||| |||||| |||||||||||||    
T  43201 gtcaacatgatggtttttgcataatgcatctattaaagaattgtaa 43246  T

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Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 47814 - 47902
Alignment:
Q  169 gccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaactgattatgttagctggttgacctctatcatgcatctc 257  Q
    |||||||||||||||| ||||||||| ||   || || ||||||||||||| ||| ||| || | |||||| ||  |||||||||||||    
T  47814 gccttgtcaacctgatagtttttgcataaagaatttattaaagaattgtaagtgaatatattgggtggttggccattatcatgcatctc 47902  T

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