View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_53 (Length: 251)
Name: NF1500_low_53
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2422417 - 2422654
Alignment:
| Q |
1 |
aaacttgcaaccatacaaaataattgatagatgattataacaaacaaagcaaacaaaaataacaacaatgaagaagagtcaaagtttagtccttaagaag |
100 |
Q |
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| T |
2422417 |
aaacttgcaaccatacaaaataattgatagatgtttataacaaacaaagcaaacaaaaataacaacaatgaagaagagtcaaagtttagtccttaagaag |
2422516 |
T |
|
| Q |
101 |
caaaaatgtctatatgagtcataaacaataatggatagatgttaagaaacttcctttgcatggaaacgtttgcttccctatgtaatattaatggaattca |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2422517 |
caaaaatgtctat--gagtcataaacaataatggatagatgttaagaaacttcctttgcatggaaacgtttgcttccctatgtaatattaatggaattca |
2422614 |
T |
|
| Q |
201 |
tcctaaagaaaagaaagcagaaggaagatgtattcttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2422615 |
tcctaaagaaaagaaagcagaaggaagatgtattcttcat |
2422654 |
T |
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