View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_54 (Length: 250)

Name: NF1500_low_54
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_54
NF1500_low_54
[»] chr2 (13 HSPs)
chr2 (1-244)||(44623924-44624169)
chr2 (120-240)||(44614737-44614857)
chr2 (1-59)||(44614858-44614916)
chr2 (54-139)||(39137894-39137979)
chr2 (58-159)||(39152579-39152680)
chr2 (58-159)||(39459256-39459357)
chr2 (79-141)||(39161864-39161926)
chr2 (79-141)||(39207268-39207330)
chr2 (79-157)||(39389096-39389174)
chr2 (58-160)||(39397787-39397889)
chr2 (58-162)||(39370109-39370213)
chr2 (7-58)||(39421698-39421749)
chr2 (110-159)||(39468343-39468392)
[»] chr8 (1 HSPs)
chr8 (7-164)||(45342049-45342206)
[»] chr6 (1 HSPs)
chr6 (79-159)||(16113303-16113383)
[»] chr7 (1 HSPs)
chr7 (54-132)||(19807851-19807929)
[»] chr5 (1 HSPs)
chr5 (9-50)||(17059589-17059630)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 44624169 - 44623924
Alignment:
Q  1 tcaacatcaataaaata--gatgaatagcaacatttaccaaattctttttcctcatcaaattgtttctctgtcagatcaagctcctttagttgtccacca 98  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||  |||||||||||| |||||||||||    
T  44624169 tcaacatcaataaaagaaagatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtccacca 44624070  T
Q  99 aaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggt 198  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| |    
T  44624069 aaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgat 44623970  T
Q  199 tttcaatttgctgcatttttccttcaaattcctctacctttgcttc 244  Q
    |||||| ||||||||||||| |||| |||| |||| ||||||||||    
T  44623969 tttcaaattgctgcatttttacttcgaatttctcttcctttgcttc 44623924  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 44614857 - 44614737
Alignment:
Q  120 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614857 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 44614758  T
Q  220 cttcaaattcctctacctttg 240  Q
    |||||||||||||||||||||    
T  44614757 cttcaaattcctctacctttg 44614737  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44614916 - 44614858
Alignment:
Q  1 tcaacatcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614916 tcaacatcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaat 44614858  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 39137979 - 39137894
Alignment:
Q  54 tcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttc 139  Q
    |||||||||||||||||||| ||| ||||||| | ||||||| |||| |||| |||||||||  || |||||||||| ||| ||||    
T  39137979 tcaaattgtttctctgtcagttcaggctccttcaattgtccatcaaatttatccagctttgaaccaggatccttgatctgtccttc 39137894  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 39152680 - 39152579
Alignment:
Q  58 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 157  Q
    ||||||||||||||| |||| |||||||    |||||| ||   ||||| |||||||||||||||||||||  || |||||||| ||| |||||||||||    
T  39152680 attgtttctctgtcaaatcatgctccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaa 39152581  T
Q  158 ct 159  Q
    ||    
T  39152580 ct 39152579  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 39459357 - 39459256
Alignment:
Q  58 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 157  Q
    |||||||| ||||||  ||| ||||||| | ||||||| |||||||||| |||||||||||  ||||||||| |||| ||||||  || || ||||||||    
T  39459357 attgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaa 39459258  T
Q  158 ct 159  Q
    ||    
T  39459257 ct 39459256  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 39161926 - 39161864
Alignment:
Q  79 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaa 141  Q
    ||||||||||||||||| |||| ||||||| |||||||| | ||||||||| |||| ||||||    
T  39161926 gctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaa 39161864  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 39207268 - 39207330
Alignment:
Q  79 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaa 141  Q
    ||||||||||||||||| |||| ||||||| |||||||| | ||||||||| |||| ||||||    
T  39207268 gctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaa 39207330  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 39389096 - 39389174
Alignment:
Q  79 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 157  Q
    ||||||||| ||||||| |||| |||||||||||||||||| |||| |||| |||  |||||| ||| || ||||||||    
T  39389096 gctcctttatttgtccatcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaa 39389174  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 39397787 - 39397889
Alignment:
Q  58 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 157  Q
    |||||||| ||||||  ||| ||||||| ||||||||| |||| |||| |||| |||||||||| ||||||| | |  || ||| ||| |||||||||||    
T  39397787 attgtttccctgtcaactcaggctccttcagttgtccatcaaatttatccagccttgactcaagttccttgactcgacctgcaacctgcttctcttttaa 39397886  T
Q  158 ctc 160  Q
    |||    
T  39397887 ctc 39397889  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 39370213 - 39370109
Alignment:
Q  58 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 157  Q
    ||||||||| ||||   ||| ||| ||||||||||||| | || ||||||| ||||||||||||| |||||| ||||  | ||| ||| |||||||||||    
T  39370213 attgtttctttgtcgactcaggcttctttagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaa 39370114  T
Q  158 ctcga 162  Q
     ||||    
T  39370113 ttcga 39370109  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 39421698 - 39421749
Alignment:
Q  7 tcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaa 58  Q
    |||||||| ||||||||||  ||||||||||| |||| ||||||||||||||    
T  39421698 tcaataaattagatgaataagaacatttaccagattcattttcctcatcaaa 39421749  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 39468392 - 39468343
Alignment:
Q  110 ctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 159  Q
    |||||||| ||| ||||||| |||| |||||||||| |||||||||||||    
T  39468392 ctttgactgaagttccttgacttgtccttcaatctgcttctcttttaact 39468343  T

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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 45342206 - 45342049
Alignment:
Q  7 tcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattatt 106  Q
    |||||||| |||||||||| |||  ||||||||||||||||||||||||  ||||||||| |||||  ||||||||||||| ||||||| | ||||||||    
T  45342206 tcaataaactagatgaataacaaattttaccaaattctttttcctcatcgtattgtttctttgtcaactcaagctcctttatttgtccatccaaattatt 45342107  T
Q  107 cagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagt 164  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  45342106 cagctttgactcaaggtccttgatttgcacttcaaactgattctcttttaactggagt 45342049  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 16113383 - 16113303
Alignment:
Q  79 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 159  Q
    ||||||| |||||||| ||||| |  ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  16113383 gctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaact 16113303  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 19807929 - 19807851
Alignment:
Q  54 tcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgattt 132  Q
    |||||||||||||||||||  |||  |||||| | ||||||| |||| |||| |||||||||  || ||||||||||||    
T  19807929 tcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatccttgattt 19807851  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 17059630 - 17059589
Alignment:
Q  9 aataaaatagatgaatagcaacatttaccaaattctttttcc 50  Q
    |||||| |||||||||| ||||||||||||||||| ||||||    
T  17059630 aataaactagatgaataacaacatttaccaaattcattttcc 17059589  T

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