View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_55 (Length: 249)

Name: NF1500_low_55
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_55
NF1500_low_55
[»] chr6 (6 HSPs)
chr6 (1-236)||(11296800-11297035)
chr6 (1-193)||(32725503-32725697)
chr6 (1-112)||(24893961-24894072)
chr6 (1-223)||(24990675-24990899)
chr6 (138-237)||(27852949-27853049)
chr6 (17-93)||(35233419-35233495)
[»] chr5 (3 HSPs)
chr5 (2-223)||(7817050-7817273)
chr5 (1-110)||(23620745-23620854)
chr5 (5-81)||(23944936-23945012)
[»] chr3 (10 HSPs)
chr3 (1-170)||(17718420-17718591)
chr3 (1-170)||(19019649-19019820)
chr3 (17-112)||(53608422-53608517)
chr3 (1-244)||(26432682-26432928)
chr3 (2-112)||(38647304-38647414)
chr3 (4-223)||(11897068-11897289)
chr3 (1-108)||(11889865-11889972)
chr3 (1-112)||(23424415-23424526)
chr3 (1-48)||(14623256-14623303)
chr3 (135-197)||(15473481-15473543)
[»] chr7 (2 HSPs)
chr7 (1-217)||(23207884-23208102)
chr7 (1-220)||(27781645-27781866)
[»] scaffold0036 (1 HSPs)
scaffold0036 (19-244)||(75840-76067)
[»] chr2 (9 HSPs)
chr2 (1-239)||(35135211-35135452)
chr2 (1-239)||(40328092-40328333)
chr2 (1-111)||(14653800-14653910)
chr2 (1-239)||(573106-573347)
chr2 (17-81)||(177429-177493)
chr2 (1-112)||(19265330-19265441)
chr2 (180-236)||(35062954-35063011)
chr2 (136-196)||(16322500-16322560)
chr2 (5-112)||(35063081-35063189)
[»] chr1 (7 HSPs)
chr1 (1-107)||(31325079-31325185)
chr1 (4-111)||(20284769-20284876)
chr1 (1-112)||(50451812-50451923)
chr1 (5-227)||(50236570-50236794)
chr1 (8-112)||(5193218-5193322)
chr1 (2-112)||(43298276-43298386)
chr1 (184-244)||(20284951-20285012)
[»] chr4 (3 HSPs)
chr4 (5-112)||(33803896-33804003)
chr4 (5-223)||(54477416-54477636)
chr4 (1-112)||(3881632-3881743)
[»] chr8 (4 HSPs)
chr8 (4-111)||(23132705-23132812)
chr8 (9-238)||(14759847-14760079)
chr8 (1-238)||(26973370-26973610)
chr8 (147-227)||(26587289-26587369)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11297035 - 11296800
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11297035 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 11296936  T
Q  101 atcatgcattgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattg 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  11296935 atcatgcattgactccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatggccttagacaaggtgactcattg 11296836  T
Q  201 tccccttatctcttcatcctttgtatgaaaagctct 236  Q
    |||| ||||||| |||||||||||||||||||||||    
T  11296835 tccctttatctcgtcatcctttgtatgaaaagctct 11296800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 32725697 - 32725503
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||| |||||| |||||||||||||||| || ||||  ||||||||||||| ||||| ||||| ||| ||||| || || ||||||||||| | |||     
T  32725697 tttcaaacttgacctggagaaagcttttgataatgtcagatgggattttcttaattcttgcctccttgagtttggatttccggacatcaccatcaagctt 32725598  T
Q  101 atcatgcattgtctc-cat-atccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtga 193  Q
    |||||||||||| || ||| |||||  | || ||||||||||||||| || |||||||| ||||| |||||| ||||||| || |||||||||||    
T  32725597 atcatgcattgtgtcacatcatccacattctctattttatggaacggtaataaaatgccctcctttaagccttcccatgatctcagacaaggtga 32725503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 24894072 - 24893961
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| ||||||||||||||||| || || ||||  |||||||| |||| ||||| ||| || || |||||||| || ||||||||||| | ||||    
T  24894072 tttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaagctc 24893973  T
Q  101 atcatgcattgt 112  Q
    ||||||||||||    
T  24893972 atcatgcattgt 24893961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24990899 - 24990675
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| |||||| ||||||| ||||| || ||||  |||||||| ||||  |||| ||| || ||||||||||| || ||||||||||| |  |||    
T  24990899 tttcaagctagacttgaagaaagcgtttgataatgtcagatgggatttccttaagtcttaccttcacgattttggttttccagacatcaccatcaaactc 24990800  T
Q  101 atcatgcattgtctc--catatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccat 198  Q
    |||||||| ||| ||  |   ||||  |  | ||||||||||||||| |||||||||||  | |||||||| |||||||  || ||||||||||||||      
T  24990799 atcatgcactgtgtcacctcctccactttttctattttatggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgc 24990700  T
Q  199 tgtccccttatctcttcatcctttg 223  Q
    | || |||||||| ||||| |||||    
T  24990699 tctctccttatcttttcattctttg 24990675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 27853049 - 27852949
Alignment:
Q  138 tggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtccccttatctcttcatcctttgtat-gaaaagctct 236  Q
    ||||||||||||||||||||||| ||||||||| | ||||  || |||||||| ||||| || || |||||  | |||||||||||||| ||||||||||    
T  27853049 tggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatggaaaagctct 27852950  T
Q  237 c 237  Q
    |    
T  27852949 c 27852949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 35233419 - 35233495
Alignment:
Q  17 gagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccat 93  Q
    ||||||||||||||||| ||||| ||||| |||||||||  || ||| ||||| || ||||||||  ||||||||||    
T  35233419 gagaaagcttttgacaatgtcaactgggagtttcttagtaattgccttcatgacttcggtttccctaacatcaccat 35233495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 7817050 - 7817273
Alignment:
Q  2 ttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctca 101  Q
    ||||| |||||| |||| |||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||| || | |||||    
T  7817050 ttcaaacttgacctggaaaaagctttcgacaacgtcaattgggatttccttagttcgtgcctccatgattttggtttccctgacatcacaatcaagctca 7817149  T
Q  102 tcatgcattgtct-ccat-atccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccatt 199  Q
    ||||||||||| |  |||  |||| ||||| |||||||||||| || |||||| | ||||| ||||||||||| ||||  || ||||| |||||||| ||    
T  7817150 tcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctcagacagggtgacccttt 7817249  T
Q  200 gtccccttatctcttcatcctttg 223  Q
     || ||||| || ||||| |||||    
T  7817250 atctccttaccttttcattctttg 7817273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23620854 - 23620745
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||| |||||| | ||||| |||||||| || ||||||||| |||||||||| || |  |||||||||||||| ||||| |||  ||| || | ||||    
T  23620854 tttcaaacttgaccttgagaatgcttttgataatgtcaattggaattttcttagatcatgtctccatgattttggcttcccagacgccacaataaagctc 23620755  T
Q  101 atcatgcatt 110  Q
    ||||||||||    
T  23620754 atcatgcatt 23620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 23944936 - 23945012
Alignment:
Q  5 aagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccc 81  Q
    ||||||||| | |||||| | ||||| ||||| |||||||||||||||| || || | | || ||||||||||||||    
T  23944936 aagcttgaccttgagaaatcctttgataacgttaattgggattttcttaatttttgcttgcaggattttggtttccc 23945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 17718591 - 17718420
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| ||| | |||||||| ||||| || |||||||||||||||||||  ||||  || || |||||||||||||| ||| ||||||| | ||||    
T  17718591 tttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccggacgtcaccatcaagctc 17718492  T
Q  101 atcatgcat--tgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcct 170  Q
    |||||||||  ||| |||  ||||| || || |||||| ||||| ||||||||||||||| |||||||||||    
T  17718491 atcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagcct 17718420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 19019820 - 19019649
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| ||| | |||||||| ||||| || |||||||||||||||||||  ||||  || || |||||||||||||| ||| ||||||| | ||||    
T  19019820 tttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccggacgtcaccatcaagctc 19019721  T
Q  101 atcatgcat--tgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcct 170  Q
    |||||||||  ||| |||  ||||| || || |||||| ||||| ||||||||||||||| |||||||||||    
T  19019720 atcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagcct 19019649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 53608517 - 53608422
Alignment:
Q  17 gagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatcatgcattgt 112  Q
    |||||||||||||| || ||||||||||||||||||| || || ||| || |||||||||||||| ||||||||||| | ||||||||||||||||    
T  53608517 gagaaagcttttgataatgtcaattgggattttcttaatttttgcctacaggattttggtttcccagacatcaccatcaagctcatcatgcattgt 53608422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26432928 - 26432682
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||||||  | ||||||||||||||||||||||| ||||| ||||| ||    | ||||||||||||||| || || ||||||||||| |  |||    
T  26432928 tttcaagcttgatctagagaaagcttttgacaacgtcaactgggaatttctaagcaactgcctccatgattttgggtttccagacatcaccatcaaactc 26432829  T
Q  101 atcatgcat--tgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccat 198  Q
    |||||||||  ||||||   ||| | ||||| |||  | ||||| || |||||  |||| || ||||| ||| | ||||  ||  |||||||||| ||||    
T  26432828 atcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtctccgacaaggtgatccat 26432729  T
Q  199 tgtccccttatctcttcatcctttgtat-gaaaagctctctgctgct 244  Q
    |||||||||||||||||||| |||| || |||||||| || ||||||    
T  26432728 tgtccccttatctcttcatcatttgcatggaaaagctatccgctgct 26432682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 38647414 - 38647304
Alignment:
Q  2 ttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctca 101  Q
    ||||| |||||| |||| ||||||||||| || ||||| ||||| || |||| ||||| ||| |||||||||||||| || ||||||||||| | |||||    
T  38647414 ttcaaacttgacctggaaaaagcttttgataatgtcaactgggacttccttaattcttgcctgcatgattttggttttccagacatcaccatcaagctca 38647315  T
Q  102 tcatgcattgt 112  Q
    |||||||||||    
T  38647314 tcatgcattgt 38647304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 11897068 - 11897289
Alignment:
Q  4 caagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatc 103  Q
    |||||||||||||||||||||||||||||||||||| | |||||| || ||    | ||||||||||||||| || ||  |||||||||| | |||||||    
T  11897068 caagcttgacttggagaaagcttttgacaacgtcaactaggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaagctcatc 11897167  T
Q  104 atgcattgtct-ccatatcc-agctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgt 201  Q
    ||||||||  |  | | ||| || |||| |||  | |||||||| |||||  ||||  | ||||||||| | |||| |||  |||||||||| || ||||    
T  11897168 atgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgt 11897267  T
Q  202 ccccttatctcttcatcctttg 223  Q
    |||||||||| |||||||||||    
T  11897268 ccccttatcttttcatcctttg 11897289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 11889972 - 11889865
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||| |||||| | |||||||||||||| || ||||| ||||||||  | ||| ||| ||||||||| ||||||||||| || || ||||| | ||||    
T  11889972 tttcaaacttgacctagagaaagcttttgataatgtcaactgggatttcttaagtgcttgcctccatgactttggtttcccagatattaccataaagctc 11889873  T
Q  101 atcatgca 108  Q
    ||||||||    
T  11889872 atcatgca 11889865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 23424415 - 23424526
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| |||||||||||||| || || || ||||  |||||||| |||| ||||| ||| || || |||||||| || ||||||||||| | ||||    
T  23424415 tttcaagctagacttggagaaagcattcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaagctc 23424514  T
Q  101 atcatgcattgt 112  Q
    ||||| ||||||    
T  23424515 atcatacattgt 23424526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14623303 - 14623256
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattt 48  Q
    |||||| ||||| || ||||||||||||||||| ||||||||||||||    
T  14623303 tttcaaacttgatttagagaaagcttttgacaaagtcaattgggattt 14623256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 15473543 - 15473481
Alignment:
Q  135 ttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 197  Q
    |||||||| ||||||||||||||| | |||||||| || |||| |||  ||||||||||||||    
T  15473543 ttatggaatggaaacaaaatgcctcctttcaagcccactcatggcctccgacaaggtgaccca 15473481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 23208102 - 23207884
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| ||||||||||||||||| || || ||||  |||||||| |||| ||||| |||||| ||||||||||| || || || ||||| |  |||    
T  23208102 tttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgcctccaggattttggttttccagatattaccatcaaactc 23208003  T
Q  101 atcatgcatt--gtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccat 198  Q
    ||||||||||  ||| ||   ||||  | ||  |||||||||||||| |||||||||||  | |||||||| || ||||  ||||||||||||||||||     
T  23208002 atcatgcattgcgtcacctcctccacattctcaattttatggaacggtaacaaaatgccccctttcaagcccacacatggtcttagacaaggtgacccac 23207903  T
Q  199 tgtccccttatctcttcat 217  Q
    | || ||||||||||||||    
T  23207902 tctctccttatctcttcat 23207884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27781866 - 27781645
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||| |||||| | |||||||||||||| || ||||||||||||||  | ||| ||| ||| ||||| ||||||||||| || || ||||| | ||||    
T  27781866 tttcaaacttgacctagagaaagcttttgataatgtcaattgggatttcttaagtgcttgccttcatgactttggtttcccagatattaccataaagctc 27781767  T
Q  101 atcatgca--ttgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccat 198  Q
    ||||||||   |||| ||  |||||  | ||  ||| |||||||||| |||||||||||| | || ||||| || |||| ||| ||||||||||||||      
T  27781766 atcatgcactgtgtcacctcatccactttctccattctatggaacgggaacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccctc 27781667  T
Q  199 tgtccccttatctcttcatcct 220  Q
    | || ||||| |||||||||||    
T  27781666 tttcaccttacctcttcatcct 27781645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 75840 - 76067
Alignment:
Q  19 gaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatcatgcattgtctccat 118  Q
    |||| |||||||||||||||| | ||||||||||||    | |||||||||||| || ||||  |||||||| || | ||||||  |||||||| |   |    
T  75840 gaaatcttttgacaacgtcaacttggattttcttagcatctgcctccatgatttcggcttcctagacatcactatcaagctcattttgcattgtatttct 75939  T
Q  119 --atccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtccccttatctcttca 216  Q
      ||| |||||||  ||||||||||| |||| |||  ||||||||||||||||||| ||||  || |||||||||||||  |||||||||||||| ||||    
T  75940 tcatctagctactcaattttatggaatggaa-caagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttca 76038  T
Q  217 tcctttgtat-gaaaagctctctgctgct 244  Q
    ||||||| || ||||||||||||| ||||    
T  76039 tcctttgcatggaaaagctctctgttgct 76067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35135452 - 35135211
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| || ||| |   || |||||| ||||| || ||||| ||||| ||||| |  |||    
T  35135452 tttcaagcttgatttagagaaagcttttgacaacgtcaactgggacttccttcgcatttgcctccaggatttcggcttcccagacattaccatcaaactc 35135353  T
Q  101 atcatgcattgtct--ccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccat 198  Q
    |||||||||||| |  ||  | | |||||||  ||||||||||| ||||||||  |  || | ||||||||||| ||||  ||| | ||||||||||| |    
T  35135352 atcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgt 35135253  T
Q  199 tgtccccttatctcttcatcctttgtat-gaaaagctctctg 239  Q
    |||| |||||||| |||||||| ||||| ||||| |||||||    
T  35135252 tgtctccttatcttttcatcctatgtatggaaaaactctctg 35135211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40328092 - 40328333
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| || ||| |   || |||||| ||||| || ||||| ||||| ||||| |  |||    
T  40328092 tttcaagcttgatttagagaaagcttttgacaacgtcaactgggaattccttcgcatttgcctccaggatttcggcttcccagacattaccatcaaactc 40328191  T
Q  101 atcatgcattgtct--ccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccat 198  Q
    |||||||||||| |  ||  | | |||||||  ||||||||||| ||||||||  |  || | ||||||||||| ||||  ||| | ||||||||||| |    
T  40328192 atcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggacttcgtcaaggtgacccgt 40328291  T
Q  199 tgtccccttatctcttcatcctttgtat-gaaaagctctctg 239  Q
    |||| |||||||| |||||||| ||||| ||||| |||||||    
T  40328292 tgtctccttatcttttcatcctatgtatggaaaaactctctg 40328333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 14653910 - 14653800
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||||||||| ||||||||||| || ||||||||||| ||||| || || |     | ||||||||||||||| || ||  |||||||||| | ||||    
T  14653910 tttcaagcttgatttggagaaagcattcgacaacgtcaactgggaattcctaaacaactgcctccatgattttggatttcctaacatcaccatcaagctc 14653811  T
Q  101 atcatgcattg 111  Q
    |||||||||||    
T  14653810 atcatgcattg 14653800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 573106 - 573347
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| |||||||| ||||||||||  || ||||  |||||||| |||| ||| | ||| ||||| ||||| || || ||||||||||| |  ||     
T  573106 tttcaagctcgacttggaaaaagcttttggtaatgtcagatgggatttccttaattcctgccttcatgagtttggatttccagacatcaccatcaaactt 573205  T
Q  101 atcatgcattgtctc-catatccagc-tactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccat 198  Q
    |||||||||| | || |||  ||| | | || |||||||||||| || |||||||||| | | || || ||| |||||| ||| ||||||||||| ||      
T  573206 atcatgcattatgtcacatcaccaacgttctctattttatggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgc 573305  T
Q  199 tgtccccttatctcttcatcctttgtat-gaaaagctctctg 239  Q
    | || ||||| || ||||||||||| || || ||||||||||    
T  573306 tctctccttacctattcatcctttgcatggagaagctctctg 573347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 177429 - 177493
Alignment:
Q  17 gagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccc 81  Q
    ||||||||||||||||| || |||||||| |||||||| || |  ||||| ||||||||||||||    
T  177429 gagaaagcttttgacaatgtgaattgggagtttcttagatcgtgtctccaagattttggtttccc 177493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 19265330 - 19265441
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||||||||| || ||||||||||||||||||||||| | ||| || ||| |   || |||||| ||||| || |||||  |||| ||||| |  |||    
T  19265330 tttcaagcttgatttagagaaagcttttgacaacgtcaacttggacttccttcgcatttgcctccaggatttcggcttcccaaacattaccatcaaactc 19265429  T
Q  101 atcatgcattgt 112  Q
    ||||||||||||    
T  19265430 atcatgcattgt 19265441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 35063011 - 35062954
Alignment:
Q  180 cttagacaaggtgacccattgtccccttatctcttcatcctttgtat-gaaaagctct 236  Q
    |||||||||||||| ||| | ||||| ||||| |||||||||||||| ||||||||||    
T  35063011 cttagacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagctct 35062954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 16322500 - 16322560
Alignment:
Q  136 tatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccc 196  Q
    ||||||| |||||||| |||||| | |||||||| || |||| |||| |||||||||||||    
T  16322500 tatggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgaccc 16322560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 35063189 - 35063081
Alignment:
Q  5 aagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttcccc-gacatcaccattatgctcatc 103  Q
    ||||||||  |||||||||||||||| || ||||| |||||||| || || |||  | | || ||||||||||||||| || |||| |||||  || |||    
T  35063189 aagcttgatctggagaaagcttttgataatgtcaactgggatttcctcaggtctaccgttcaagattttggtttcccctgatatcatcattaaacttatc 35063090  T
Q  104 atgcattgt 112  Q
    |||||||||    
T  35063089 atgcattgt 35063081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 31325185 - 31325079
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||| |||||| |||||||||||||||| || |||||||||||||| |||| ||||| |||||||||||| ||||| || |||||||| || | ||||    
T  31325185 tttcaaacttgacctggagaaagcttttgataatgtcaattgggatttccttaattcttgcctccatgatttcggttttccagacatcacaatcaagctc 31325086  T
Q  101 atcatgc 107  Q
    |||||||    
T  31325085 atcatgc 31325079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 20284769 - 20284876
Alignment:
Q  4 caagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatc 103  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||    | ||||||||||||||| || ||  |||||||||| | |||||||    
T  20284769 caagcttgacttggagaaagctttcgacaacgtcaactgggattttctaagcaactgcctccatgattttggatttccgaacatcaccatcaagctcatc 20284868  T
Q  104 atgcattg 111  Q
    ||||||||    
T  20284869 atgcattg 20284876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 50451812 - 50451923
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| || ||||| ||||| ||||| || ||||| ||||||||||||| ||||| ||| ||||| |||||||| || ||||||||||| |  ||     
T  50451812 tttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttggttttccggacatcaccatcaaactt 50451911  T
Q  101 atcatgcattgt 112  Q
    ||||||||||||    
T  50451912 atcatgcattgt 50451923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 50236794 - 50236570
Alignment:
Q  5 aagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatca 104  Q
    |||||||| ||||| || |||||||| || || |||| ||| || || | |||||  |||||||||||||| || || ||||||||||  |  |||||||    
T  50236794 aagcttgatttggaaaaggcttttgataatgttaattaggacttcctcaattcttgtctccatgattttggatttccggacatcaccaccaaactcatca 50236695  T
Q  105 tgcat--tgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtc 202  Q
    |||||  |||||||  | ||| ||||| ||| ||||||||||| ||||| |||||  | ||||||||||| |||| ||| ||| ||||||| ||  | ||    
T  50236694 tgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggcctcagataaggtgatccgctttc 50236595  T
Q  203 cccttatctcttcatcctttgtatg 227  Q
    |||||| || |||||| | ||||||    
T  50236594 cccttaccttttcatcttgtgtatg 50236570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 5193322 - 5193218
Alignment:
Q  8 cttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatcatgc 107  Q
    |||||| |||||||||||||||| || ||||  || |||||||||| ||||| ||||| ||||||||| ||  |  |||||||||| | ||| |||||||    
T  5193322 cttgacctggagaaagcttttgataatgtcagatgagattttcttaattcttgcctccttgattttggatttacgaacatcaccatcaagcttatcatgc 5193223  T
Q  108 attgt 112  Q
    |||||    
T  5193222 attgt 5193218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 43298276 - 43298386
Alignment:
Q  2 ttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctca 101  Q
    ||||| |||||| || ||||||||||| | || ||||| ||||||||||| | ||||| ||||  ||||||||| ||| |  |||||||||| | ||| |    
T  43298276 ttcaaacttgacctgaagaaagcttttaataatgtcaaatgggattttctaaattcttgcctcattgattttggattctcgaacatcaccatgaagctta 43298375  T
Q  102 tcatgcattgt 112  Q
    |||||||||||    
T  43298376 tcatgcattgt 43298386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 20284951 - 20285012
Alignment:
Q  184 gacaaggtgacccattgtccccttatctcttcatcctttgtat-gaaaagctctctgctgct 244  Q
    |||||||||| || |||||||||||||| ||||||||||| || |||||||| || ||||||    
T  20284951 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgct 20285012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 33803896 - 33804003
Alignment:
Q  5 aagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatca 104  Q
    ||||||||| | |||||||| ||||| || || |||||||||||||||| || || | | || |||||||||||||| ||||||||||| | ||||||||    
T  33803896 aagcttgaccttgagaaagcctttgataatgttaattgggattttcttaatttttgcttgcaggattttggtttcccagacatcaccatcaagctcatca 33803995  T
Q  105 tgcattgt 112  Q
    ||||||||    
T  33803996 tgcattgt 33804003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 54477636 - 54477416
Alignment:
Q  5 aagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatca 104  Q
    |||||||| ||| | |||||||||||||| ||||||||||| || |||||    | ||| |||||||| |  ||||| ||||||||||| | ||||||||    
T  54477636 aagcttgatttgaaaaaagcttttgacaatgtcaattgggaattccttagcaactgccttcatgatttcgagttccctgacatcaccatcaagctcatca 54477537  T
Q  105 tgcattgt-ctccat-atccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtc 202  Q
    ||||||||  | ||| ||| |  |||| |||  | ||||| ||||||||  | || || ||||||||||| ||||  ||  | |||||||| || |||||    
T  54477536 tgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtctgcgccaaggtgatcctttgtc 54477437  T
Q  203 cccttatctcttcatcctttg 223  Q
    ||||||||||||||| |||||    
T  54477436 cccttatctcttcattctttg 54477416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3881632 - 3881743
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    ||||||||| || ||||| ||||| ||||| || ||||| ||||||||||||| ||||| ||| ||||| |||| ||| || | ||||||||| |  ||     
T  3881632 tttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttgattttccggccatcaccatcaaactt 3881731  T
Q  101 atcatgcattgt 112  Q
    ||||||||||||    
T  3881732 atcatgcattgt 3881743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 23132812 - 23132705
Alignment:
Q  4 caagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatc 103  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| || ||    | ||||||||||||||| || ||  |||||||||| | | |||||    
T  23132812 caagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaagttcatc 23132713  T
Q  104 atgcattg 111  Q
    ||||||||    
T  23132712 atgcattg 23132705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 14759847 - 14760079
Alignment:
Q  9 ttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatcatgca 108  Q
    ||||| |||| |||||||||||||| || || ||||| || ||  ||||||  || ||||||||||| ||||||||||| || || | ||||||||||||    
T  14759847 ttgacctggaaaaagcttttgacaaagtaaactgggaattcctgcgttcttgtcttcatgattttgggttccccgacataacaataaggctcatcatgca 14759946  T
Q  109 --ttgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtcccct 206  Q
       ||| ||   ||||| |||||  || |||||||| ||||||||| | |||| |||||| || || | || |||| | ||||| || || ||||||||     
T  14759947 ctgtgtttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagatccgttgtcccca 14760046  T
Q  207 tatctcttcatcctttgtat-gaaaagctctct 238  Q
    || |||||||| |||||||| ||||||||||||    
T  14760047 tacctcttcattctttgtatggaaaagctctct 14760079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26973370 - 26973610
Alignment:
Q  1 tttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctc 100  Q
    |||||| |||||| |||| |||||||||||||| || || ||||| || ||  ||||||  || ||||||||||| ||||||||||| || || | ||||    
T  26973370 tttcaaacttgacctggaaaaagcttttgacaaagtaaactgggaattcctgcgttcttgtcttcatgattttgggttccccgacataacaataaggctc 26973469  T
Q  101 atcatgca--ttgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccat 198  Q
    ||||||||   ||| ||   ||||| |||||  || |||||||| ||||||||| | |||| |||||| || || | || |||| | ||||| || || |    
T  26973470 atcatgcactgtgtttcttcatccaactactccatcttatggaatggaaacaaacttccttacttcaaacccacacgtggccttcgccaaggagatccgt 26973569  T
Q  199 tgtccccttatctcttcatcctttgtat-gaaaagctctct 238  Q
    |||| || || |||||||| |||||||| ||||||||||||    
T  26973570 tgtcaccatacctcttcattctttgtatggaaaagctctct 26973610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 26587289 - 26587369
Alignment:
Q  147 aacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtccccttatctcttcatcctttgtatg 227  Q
    |||||| ||||  ||||||||||||| |||| |||  ||||||||||||||||||| || || |||||||| |||||||||    
T  26587289 aacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatg 26587369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University