View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_57 (Length: 248)
Name: NF1500_low_57
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 27403276 - 27403496
Alignment:
| Q |
11 |
caaaggtgatgaattctataatttcaaaatcacaatcgacattcttaaaggggacatacttggtggatggtgtgatgatagttaaagaggagtaatagag |
110 |
Q |
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| T |
27403276 |
caaaggtgatgaattctataatttcaaaatcacaatcgacattcttaaaggggacatacttggtggatggtgtgatgatagttaaagaggagtaatagag |
27403375 |
T |
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| Q |
111 |
aatgtctaattttaaaagttgattttgaaaaggcttatgattcaatagattagagttttttaaaatatatgttaccaagagtaggttttgttgataaggg |
210 |
Q |
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||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27403376 |
aatgtctaattttaaaaattgattttgaaaagactta-gattcaatagattagagtttttttaaatatatgttaccaagagtaggttttgttgataaggg |
27403474 |
T |
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| Q |
211 |
gatagtgtgaatgaatgcttgt |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
27403475 |
gatagtgtgaatgaatgcttgt |
27403496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 9875460 - 9875237
Alignment:
| Q |
11 |
caaaggtgatgaattctataatttcaaaatcacaatcgacattcttaaaggggacatacttggtggatggtgtgatgatagttaa--------------- |
95 |
Q |
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|||||| |||||||||||| |||||||||||||||||| | ||||||||| ||| ||| ||||||| |||||||||||||||||| |
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| T |
9875460 |
caaaggcgatgaattctattatttcaaaatcacaatcggctttcttaaagaggagatatttggtgggtggtgtgatgatagttaatgaggtggtggattt |
9875361 |
T |
|
| Q |
96 |
-----agaggagtaatagagaatgtctaattttaaaagttgattttgaaaaggcttatgattcaatagattagagttttttaaaatatatgttaccaaga |
190 |
Q |
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|||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| | |||| |||||||| | |||||||||| |||| |
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| T |
9875360 |
ggcatagaggagtaatagagaatgtctgatgttaaaatttgattttgaaaaggcttatgattcggtggattgaagttttttggagtatatgttacgaaga |
9875261 |
T |
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| Q |
191 |
gtaggttttgttgataaggggata |
214 |
Q |
| |
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| |||| |||||||||| ||||| |
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| T |
9875260 |
ttgggttatgttgataagtggata |
9875237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 39435782 - 39435742
Alignment:
| Q |
125 |
aaagttgattttgaaaaggcttatgattcaatagattagag |
165 |
Q |
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| T |
39435782 |
aaagttaattttgaaaaggcatatgattcaatagattagag |
39435742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 16175439 - 16175468
Alignment:
| Q |
125 |
aaagttgattttgaaaaggcttatgattca |
154 |
Q |
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| T |
16175439 |
aaagttgattttgaaaaggcttatgattca |
16175468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 15015021 - 15014993
Alignment:
| Q |
125 |
aaagttgattttgaaaaggcttatgattc |
153 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
15015021 |
aaagttgattttgaaaaggcttatgattc |
15014993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 17189383 - 17189355
Alignment:
| Q |
125 |
aaagttgattttgaaaaggcttatgattc |
153 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17189383 |
aaagttgattttgaaaaggcttatgattc |
17189355 |
T |
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