View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_6 (Length: 523)

Name: NF1500_low_6
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_6
NF1500_low_6
[»] chr4 (4 HSPs)
chr4 (404-523)||(5847066-5847185)
chr4 (468-523)||(5885203-5885258)
chr4 (57-114)||(38844262-38844319)
chr4 (57-121)||(31307160-31307224)
[»] chr8 (2 HSPs)
chr8 (370-436)||(23268755-23268823)
chr8 (470-514)||(23268687-23268731)
[»] chr2 (4 HSPs)
chr2 (57-123)||(18105456-18105522)
chr2 (57-121)||(5394380-5394444)
chr2 (57-121)||(12133324-12133388)
chr2 (57-121)||(37568821-37568885)
[»] chr7 (1 HSPs)
chr7 (57-121)||(29059788-29059852)
[»] chr5 (1 HSPs)
chr5 (57-121)||(10591910-10591974)
[»] chr3 (1 HSPs)
chr3 (57-121)||(14352537-14352601)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 404 - 523
Target Start/End: Original strand, 5847066 - 5847185
Alignment:
Q  404 gtcatgttccacgaaatttctctaaaaacttttccacaatgcaaaacacgtgaatgattgtgtatgtatgcatatttctgaacctttataaaacaaacca 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  5847066 gtcatgttccacgaaatttctctaaaaacttttccacaatgcaaaacacgtgaatgattgtgtatgtatgcatatttctgaaactttataacacaaacca 5847165  T
Q  504 tttgtgctgttcttgtcact 523  Q
    ||||||||||| ||||||||    
T  5847166 tttgtgctgttgttgtcact 5847185  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 5885203 - 5885258
Alignment:
Q  468 tgtatgcatatttctgaacctttataaaacaaaccatttgtgctgttcttgtcact 523  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||    
T  5885203 tgtatgcatatttctgaaactttataaaacaaaccatttgtgttgttgttgtcact 5885258  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 38844262 - 38844319
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaag 114  Q
    |||||||||||  || | ||||||||| |||||||| ||||||||| |||||||||||    
T  38844262 tggattcgaactcatgaccttggttaagctagaagagactcgttccatctcatttaag 38844319  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 31307160 - 31307224
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaagtgctctt 121  Q
    |||||||||||| |  | ||||||||| |||||||| || |||||| |||||| |||||||||||    
T  31307160 tggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctctt 31307224  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 23268823 - 23268755
Alignment:
Q  370 aagtcatcgttaatattacctgatag-aaaaatgtg-tcatgttccacgaaatttctctaaaaactttt 436  Q
    |||||||| ||||||| ||||||||| |||||| || |||||||||||||||||||||| || ||||||    
T  23268823 aagtcatcattaatatcacctgatagcaaaaatatgctcatgttccacgaaatttctctcaagactttt 23268755  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 23268731 - 23268687
Alignment:
Q  470 tatgcatatttctgaacctttataaaacaaaccatttgtgctgtt 514  Q
    |||||||||||||||| || || |||||||||||||||| |||||    
T  23268731 tatgcatatttctgaaactgtacaaaacaaaccatttgttctgtt 23268687  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 18105456 - 18105522
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaagtgctcttag 123  Q
    |||||||||||| |  | ||||||||| |||||||| ||||||||| |||||| |||| ||||||||    
T  18105456 tggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatataagcgctcttag 18105522  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 5394444 - 5394380
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaagtgctctt 121  Q
    |||||||||||| |  | ||||||||| |||||||| ||||||||| |||||| |||| ||||||    
T  5394444 tggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctctt 5394380  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 12133324 - 12133388
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaagtgctctt 121  Q
    |||||||||||| || | |||| |||| |||||||| ||||||||| |||||| |||| ||||||    
T  12133324 tggattcgaacccatgaccttgattaagctagaagagactcgttccatctcatctaagcgctctt 12133388  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 37568821 - 37568885
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaagtgctctt 121  Q
    |||||||||||| |  | ||||||||| |||||||| || |||||| |||||| |||||||||||    
T  37568821 tggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtgctctt 37568885  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 29059852 - 29059788
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaagtgctctt 121  Q
    |||||||||||| |  | ||||||||| |||||||| || |||||| |||||| |||||||||||    
T  29059852 tggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctctt 29059788  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 10591974 - 10591910
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaagtgctctt 121  Q
    |||||||||||| |  | ||||||||| |||||||| || |||||| |||||| |||||||||||    
T  10591974 tggattcgaacccaggaccttggttaatctagaagagacccgttccatctcatctaagtgctctt 10591910  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 14352601 - 14352537
Alignment:
Q  57 tggattcgaaccaataatcttggttaaactagaagatactcgttccgtctcatttaagtgctctt 121  Q
    |||||||||||| |  ||||||||||| |||||||| ||| ||||| |||||| |||| ||||||    
T  14352601 tggattcgaaccgaatatcttggttaagctagaagagacttgttccatctcatctaagcgctctt 14352537  T

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