View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1500_low_61 (Length: 242)
Name: NF1500_low_61
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_61 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 44615258 - 44615048
Alignment:
| Q |
18 |
ccatcaatggtaatactgaattggtcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctctttgatcatatttacttaagcaacaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44615258 |
ccatcaatggtaatactgaattggtcatccatgttagatatatctgcatatttagatagcagatagtcaagctctttgatcatatttacttaagcaacaa |
44615159 |
T |
|
| Q |
118 |
aaattgaaggtgacaaaaggaattaaaaaagatatatactatgaaagcatgtgagaaagaaaaacattatactaacagtttcaaagtcaatatagaacct |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44615158 |
aaattgaaggtgac--aaggaattaaaaaagatatatactatgaaagcatgtgagaaagaaaaacattatactaacagtttcaaagtcaatatagaacct |
44615061 |
T |
|
| Q |
218 |
tagtgaattattg |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44615060 |
tagtgaattattg |
44615048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 44624625 - 44624513
Alignment:
| Q |
42 |
tcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctctttgatcatatttacttaagcaacaaaaattgaaggtgacaaaaggaatt |
141 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| || ||||||||| ||||||||| | ||||||| |
|
|
| T |
44624625 |
tcatccatgtaagatgtatctgcatatttagatagcagatagttaagctttctgatcatatttacagaaacaacaaaaaatgaaggtgatcataggaatt |
44624526 |
T |
|
| Q |
142 |
aaaaaagatatat |
154 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44624525 |
caaaaagatatat |
44624513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 44749611 - 44749661
Alignment:
| Q |
25 |
tggtaatactgaattggtcatccatgttagatgtatctgcatatttagaaa |
75 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44749611 |
tggttatactgtattgatcatccatgttagatgtatctgcatatttagaaa |
44749661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 39473136 - 39473191
Alignment:
| Q |
36 |
aattggtcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctc |
91 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||||||||| |||||||| | |||||| |
|
|
| T |
39473136 |
aattgatcatccatgtaagatgtagctgcatatttagatagcagatatttaagctc |
39473191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 44895473 - 44895510
Alignment:
| Q |
36 |
aattggtcatccatgttagatgtatctgcatatttaga |
73 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
44895473 |
aattgatcatccatgttagatgtaactgcatatttaga |
44895510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 39387870 - 39387930
Alignment:
| Q |
22 |
caatggtaatactgaattggtcatccatgttagatgtatctgcatatttagaaagcagata |
82 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
39387870 |
caatggtacgacttaattgatcatccatgtaagattcaactgcatatttagaaagcagata |
39387930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 17060498 - 17060370
Alignment:
| Q |
18 |
ccatcaatggtaatactgaattggtcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctctttgatcatatttacttaagcaacaa |
117 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
17060498 |
ccatcaatggtaatacttaattcatcatccatgtaagatgtatctgcatatttagataaaagatacttaagctctcatatcatatttacataagcaacaa |
17060399 |
T |
|
| Q |
118 |
aaattgaaggtgacaaaaggaattaaaaa |
146 |
Q |
| |
|
|| ||| ||| ||| |||||||||||| |
|
|
| T |
17060398 |
taaatgagggtttcaataggaattaaaaa |
17060370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 45342828 - 45342640
Alignment:
| Q |
18 |
ccatcaatggtaatactgaattggtcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctctttgatcatatttacttaagcaacaa |
117 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||| |||||| || |||||||| |||||||| | ||||||| | ||||||||| |||| | ||| |
|
|
| T |
45342828 |
ccatcaatggtagtacttaattgatcatccatgtaagatgtgactaagtatttagatagcagatatttaagctctct---catatttacataagaaccaa |
45342732 |
T |
|
| Q |
118 |
aaattgaaggtgacaaaaggaattaaaaaagatatatactatgaaagcatgtgagaaagaaaaacattatactaacagtttcaaagtcaatatagaacct |
217 |
Q |
| |
|
|| | |||||||||| ||||||||||||| ||||||||| |||||| || ||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
45342731 |
taaataaaggtgacaataggaattaaaaaatatatatactgtgaaag----------aggaaagcattatactaacaattacaaagtcaatatagaacct |
45342642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University