View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_63 (Length: 238)
Name: NF1500_low_63
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 1984434 - 1984642
Alignment:
| Q |
12 |
caaaggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgttt |
111 |
Q |
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| T |
1984434 |
caaaggtcccgatccaaccgatgattcgtatgcaaccaagtttcgaagaaaaacttcggtgttgacatccaaactaattgtgggaaggtgaaaagtgttt |
1984533 |
T |
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| Q |
112 |
gttttagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcct |
211 |
Q |
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| T |
1984534 |
gttttagcatcaaaactaatgcttgatatgcttccttttgcaggtaagaaattaacccctgcagtcacaagttgttcaacagaaggaatagcgatttcct |
1984633 |
T |
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| Q |
212 |
ccaccaagg |
220 |
Q |
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||||||||| |
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| T |
1984634 |
ccaccaagg |
1984642 |
T |
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Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 1977513 - 1977715
Alignment:
| Q |
12 |
caaaggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgttt |
111 |
Q |
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| T |
1977513 |
caaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgttt |
1977612 |
T |
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| Q |
112 |
gttttagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcct |
211 |
Q |
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| T |
1977613 |
gttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcat |
1977712 |
T |
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| Q |
212 |
cca |
214 |
Q |
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||| |
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| T |
1977713 |
cca |
1977715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 1948889 - 1948696
Alignment:
| Q |
16 |
ggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgtttgttt |
115 |
Q |
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||||| ||||||||||||||||| || |||||||||||||| | ||||||||||| || |||||||||| || | ||||||| |||||| |||||| |
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| T |
1948889 |
ggtcccgatccaaccgatgattcatacgcaaccaagtttcttagaaaaacttcggtattaacatccaaaccgataataggaaggtaaaaagttcttgttt |
1948790 |
T |
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| Q |
116 |
tagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttc |
209 |
Q |
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| T |
1948789 |
ttgcatcaaaactaatacttgatatgctcccattagtaggagaaaaattcactcctgatttcacaagttctttaacagaaggaatagtgatttc |
1948696 |
T |
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